Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01245

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01240 and ABZR87_RS01245 are separated by 127 nucleotidesABZR87_RS01245 and ABZR87_RS01250 are separated by 173 nucleotidesABZR87_RS01250 and ABZR87_RS01255 are separated by 314 nucleotides ABZR87_RS01240: ABZR87_RS01240 - catalase/peroxidase HPI, at 256,490 to 258,655 _RS01240 ABZR87_RS01245: ABZR87_RS01245 - Dps family protein, at 258,783 to 259,283 _RS01245 ABZR87_RS01250: ABZR87_RS01250 - hypothetical protein, at 259,457 to 259,699 _RS01250 ABZR87_RS01255: ABZR87_RS01255 - LysR substrate-binding domain-containing protein, at 260,014 to 260,961 _RS01255 Position (kb) 258 259 260Strain fitness (log2 ratio) -1 0 1 2at 257.994 kb on + strand, within ABZR87_RS01240at 257.994 kb on + strand, within ABZR87_RS01240at 257.995 kb on - strand, within ABZR87_RS01240at 257.995 kb on - strand, within ABZR87_RS01240at 257.995 kb on - strand, within ABZR87_RS01240at 257.995 kb on - strand, within ABZR87_RS01240at 258.090 kb on + strand, within ABZR87_RS01240at 258.091 kb on - strand, within ABZR87_RS01240at 258.091 kb on - strand, within ABZR87_RS01240at 258.219 kb on + strand, within ABZR87_RS01240at 258.345 kb on + strand, within ABZR87_RS01240at 258.345 kb on + strand, within ABZR87_RS01240at 258.345 kb on + strand, within ABZR87_RS01240at 258.345 kb on + strand, within ABZR87_RS01240at 258.345 kb on + strand, within ABZR87_RS01240at 258.346 kb on - strand, within ABZR87_RS01240at 258.346 kb on - strand, within ABZR87_RS01240at 258.346 kb on - strand, within ABZR87_RS01240at 258.391 kb on - strand, within ABZR87_RS01240at 258.391 kb on - strand, within ABZR87_RS01240at 258.466 kb on - strandat 258.492 kb on + strandat 258.493 kb on - strandat 258.668 kb on + strandat 258.668 kb on + strandat 258.784 kb on + strandat 258.784 kb on + strandat 258.784 kb on + strandat 258.785 kb on - strandat 258.785 kb on - strandat 258.785 kb on - strandat 258.785 kb on - strandat 258.785 kb on - strandat 258.785 kb on - strandat 258.966 kb on - strand, within ABZR87_RS01245at 258.966 kb on - strand, within ABZR87_RS01245at 258.966 kb on - strand, within ABZR87_RS01245at 259.009 kb on + strand, within ABZR87_RS01245at 259.009 kb on + strand, within ABZR87_RS01245at 259.084 kb on + strand, within ABZR87_RS01245at 259.084 kb on + strand, within ABZR87_RS01245at 259.084 kb on + strand, within ABZR87_RS01245at 259.084 kb on + strand, within ABZR87_RS01245at 259.084 kb on + strand, within ABZR87_RS01245at 259.085 kb on - strand, within ABZR87_RS01245at 259.085 kb on - strand, within ABZR87_RS01245at 259.085 kb on - strand, within ABZR87_RS01245at 259.085 kb on - strand, within ABZR87_RS01245at 259.085 kb on - strand, within ABZR87_RS01245at 259.147 kb on + strand, within ABZR87_RS01245at 259.147 kb on + strand, within ABZR87_RS01245at 259.147 kb on + strand, within ABZR87_RS01245at 259.147 kb on + strand, within ABZR87_RS01245at 259.147 kb on + strand, within ABZR87_RS01245at 259.148 kb on - strand, within ABZR87_RS01245at 259.148 kb on - strand, within ABZR87_RS01245at 259.148 kb on - strand, within ABZR87_RS01245at 259.148 kb on - strand, within ABZR87_RS01245at 259.162 kb on + strand, within ABZR87_RS01245at 259.162 kb on + strand, within ABZR87_RS01245at 259.162 kb on + strand, within ABZR87_RS01245at 259.163 kb on - strand, within ABZR87_RS01245at 259.171 kb on + strand, within ABZR87_RS01245at 259.171 kb on + strand, within ABZR87_RS01245at 259.172 kb on - strand, within ABZR87_RS01245at 259.172 kb on - strand, within ABZR87_RS01245at 259.172 kb on - strand, within ABZR87_RS01245at 259.176 kb on - strand, within ABZR87_RS01245at 259.176 kb on - strand, within ABZR87_RS01245at 259.295 kb on + strandat 259.296 kb on - strandat 259.357 kb on - strandat 259.412 kb on + strandat 259.412 kb on + strandat 259.413 kb on - strandat 259.477 kb on + strandat 259.477 kb on + strandat 259.478 kb on - strandat 259.478 kb on - strandat 259.478 kb on - strandat 259.478 kb on - strandat 259.498 kb on + strand, within ABZR87_RS01250at 259.499 kb on - strand, within ABZR87_RS01250at 259.499 kb on - strand, within ABZR87_RS01250at 259.499 kb on - strand, within ABZR87_RS01250at 259.499 kb on - strand, within ABZR87_RS01250at 259.520 kb on + strand, within ABZR87_RS01250at 259.520 kb on + strand, within ABZR87_RS01250at 259.520 kb on + strand, within ABZR87_RS01250at 259.521 kb on - strand, within ABZR87_RS01250at 259.792 kb on + strandat 259.792 kb on + strandat 259.792 kb on + strandat 259.793 kb on - strandat 259.793 kb on - strandat 259.965 kb on + strandat 260.171 kb on + strand, within ABZR87_RS01255at 260.171 kb on + strand, within ABZR87_RS01255at 260.171 kb on + strand, within ABZR87_RS01255at 260.171 kb on + strand, within ABZR87_RS01255at 260.171 kb on + strand, within ABZR87_RS01255at 260.171 kb on + strand, within ABZR87_RS01255at 260.172 kb on - strand, within ABZR87_RS01255at 260.172 kb on - strand, within ABZR87_RS01255at 260.172 kb on - strand, within ABZR87_RS01255at 260.172 kb on - strand, within ABZR87_RS01255at 260.172 kb on - strand, within ABZR87_RS01255at 260.172 kb on - strand, within ABZR87_RS01255at 260.217 kb on + strand, within ABZR87_RS01255at 260.217 kb on + strand, within ABZR87_RS01255at 260.217 kb on + strand, within ABZR87_RS01255at 260.217 kb on + strand, within ABZR87_RS01255at 260.218 kb on - strand, within ABZR87_RS01255at 260.256 kb on + strand, within ABZR87_RS01255at 260.256 kb on + strand, within ABZR87_RS01255at 260.256 kb on + strand, within ABZR87_RS01255at 260.256 kb on + strand, within ABZR87_RS01255at 260.256 kb on + strand, within ABZR87_RS01255at 260.256 kb on + strand, within ABZR87_RS01255at 260.256 kb on + strand, within ABZR87_RS01255at 260.256 kb on + strand, within ABZR87_RS01255at 260.256 kb on + strand, within ABZR87_RS01255at 260.256 kb on + strand, within ABZR87_RS01255at 260.256 kb on + strand, within ABZR87_RS01255at 260.256 kb on + strand, within ABZR87_RS01255at 260.256 kb on + strand, within ABZR87_RS01255at 260.256 kb on + strand, within ABZR87_RS01255at 260.257 kb on - strand, within ABZR87_RS01255at 260.257 kb on - strand, within ABZR87_RS01255at 260.257 kb on - strand, within ABZR87_RS01255at 260.257 kb on - strand, within ABZR87_RS01255at 260.257 kb on - strand, within ABZR87_RS01255at 260.257 kb on - strand, within ABZR87_RS01255at 260.257 kb on - strand, within ABZR87_RS01255at 260.257 kb on - strand, within ABZR87_RS01255at 260.257 kb on - strand, within ABZR87_RS01255at 260.257 kb on - strand, within ABZR87_RS01255at 260.257 kb on - strand, within ABZR87_RS01255at 260.257 kb on - strand, within ABZR87_RS01255at 260.257 kb on - strand, within ABZR87_RS01255at 260.257 kb on - strand, within ABZR87_RS01255at 260.257 kb on - strand, within ABZR87_RS01255

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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257,994 + ABZR87_RS01240 0.69 -0.1
257,994 + ABZR87_RS01240 0.69 -0.4
257,995 - ABZR87_RS01240 0.69 +0.8
257,995 - ABZR87_RS01240 0.69 +0.5
257,995 - ABZR87_RS01240 0.69 -0.1
257,995 - ABZR87_RS01240 0.69 -1.6
258,090 + ABZR87_RS01240 0.74 +0.7
258,091 - ABZR87_RS01240 0.74 +0.3
258,091 - ABZR87_RS01240 0.74 -0.3
258,219 + ABZR87_RS01240 0.80 +0.4
258,345 + ABZR87_RS01240 0.86 +1.0
258,345 + ABZR87_RS01240 0.86 +0.4
258,345 + ABZR87_RS01240 0.86 -0.1
258,345 + ABZR87_RS01240 0.86 +0.4
258,345 + ABZR87_RS01240 0.86 +0.4
258,346 - ABZR87_RS01240 0.86 +0.2
258,346 - ABZR87_RS01240 0.86 -0.2
258,346 - ABZR87_RS01240 0.86 +0.1
258,391 - ABZR87_RS01240 0.88 +0.1
258,391 - ABZR87_RS01240 0.88 +0.4
258,466 - -0.2
258,492 + -0.0
258,493 - +0.9
258,668 + -0.3
258,668 + +1.7
258,784 + -0.1
258,784 + +1.6
258,784 + +1.0
258,785 - +0.4
258,785 - +0.7
258,785 - -0.2
258,785 - +1.9
258,785 - -0.9
258,785 - +0.2
258,966 - ABZR87_RS01245 0.37 +0.7
258,966 - ABZR87_RS01245 0.37 +1.6
258,966 - ABZR87_RS01245 0.37 +1.4
259,009 + ABZR87_RS01245 0.45 +1.6
259,009 + ABZR87_RS01245 0.45 +1.0
259,084 + ABZR87_RS01245 0.60 +2.6
259,084 + ABZR87_RS01245 0.60 +0.0
259,084 + ABZR87_RS01245 0.60 +0.6
259,084 + ABZR87_RS01245 0.60 +0.3
259,084 + ABZR87_RS01245 0.60 +0.6
259,085 - ABZR87_RS01245 0.60 -0.7
259,085 - ABZR87_RS01245 0.60 -0.4
259,085 - ABZR87_RS01245 0.60 -0.2
259,085 - ABZR87_RS01245 0.60 -0.6
259,085 - ABZR87_RS01245 0.60 +1.0
259,147 + ABZR87_RS01245 0.73 +2.6
259,147 + ABZR87_RS01245 0.73 +0.6
259,147 + ABZR87_RS01245 0.73 -0.6
259,147 + ABZR87_RS01245 0.73 +0.6
259,147 + ABZR87_RS01245 0.73 -0.4
259,148 - ABZR87_RS01245 0.73 -0.7
259,148 - ABZR87_RS01245 0.73 -0.2
259,148 - ABZR87_RS01245 0.73 +0.3
259,148 - ABZR87_RS01245 0.73 +0.8
259,162 + ABZR87_RS01245 0.76 +1.6
259,162 + ABZR87_RS01245 0.76 +0.6
259,162 + ABZR87_RS01245 0.76 +0.6
259,163 - ABZR87_RS01245 0.76 +1.0
259,171 + ABZR87_RS01245 0.77 +0.3
259,171 + ABZR87_RS01245 0.77 +1.6
259,172 - ABZR87_RS01245 0.78 -0.6
259,172 - ABZR87_RS01245 0.78 -1.0
259,172 - ABZR87_RS01245 0.78 -0.2
259,176 - ABZR87_RS01245 0.78 -0.7
259,176 - ABZR87_RS01245 0.78 +0.0
259,295 + +1.3
259,296 - +0.7
259,357 - -0.1
259,412 + +0.6
259,412 + +1.0
259,413 - +0.3
259,477 + -0.7
259,477 + -0.2
259,478 - -0.1
259,478 - +1.0
259,478 - +0.1
259,478 - +0.3
259,498 + ABZR87_RS01250 0.17 +0.1
259,499 - ABZR87_RS01250 0.17 +0.1
259,499 - ABZR87_RS01250 0.17 -0.5
259,499 - ABZR87_RS01250 0.17 -0.9
259,499 - ABZR87_RS01250 0.17 +0.1
259,520 + ABZR87_RS01250 0.26 -0.4
259,520 + ABZR87_RS01250 0.26 +0.4
259,520 + ABZR87_RS01250 0.26 +0.0
259,521 - ABZR87_RS01250 0.26 +0.7
259,792 + +0.2
259,792 + +1.0
259,792 + +0.2
259,793 - +0.0
259,793 - +0.4
259,965 + +0.3
260,171 + ABZR87_RS01255 0.17 +0.2
260,171 + ABZR87_RS01255 0.17 -0.4
260,171 + ABZR87_RS01255 0.17 +0.2
260,171 + ABZR87_RS01255 0.17 +0.1
260,171 + ABZR87_RS01255 0.17 +0.5
260,171 + ABZR87_RS01255 0.17 +0.4
260,172 - ABZR87_RS01255 0.17 -0.2
260,172 - ABZR87_RS01255 0.17 +0.1
260,172 - ABZR87_RS01255 0.17 -0.6
260,172 - ABZR87_RS01255 0.17 +0.6
260,172 - ABZR87_RS01255 0.17 +0.9
260,172 - ABZR87_RS01255 0.17 -0.1
260,217 + ABZR87_RS01255 0.21 +0.2
260,217 + ABZR87_RS01255 0.21 +0.2
260,217 + ABZR87_RS01255 0.21 +0.0
260,217 + ABZR87_RS01255 0.21 -0.1
260,218 - ABZR87_RS01255 0.22 +0.0
260,256 + ABZR87_RS01255 0.26 +0.8
260,256 + ABZR87_RS01255 0.26 -0.3
260,256 + ABZR87_RS01255 0.26 +0.1
260,256 + ABZR87_RS01255 0.26 +0.3
260,256 + ABZR87_RS01255 0.26 +0.0
260,256 + ABZR87_RS01255 0.26 +0.2
260,256 + ABZR87_RS01255 0.26 +0.0
260,256 + ABZR87_RS01255 0.26 +0.2
260,256 + ABZR87_RS01255 0.26 -0.5
260,256 + ABZR87_RS01255 0.26 +0.5
260,256 + ABZR87_RS01255 0.26 +0.4
260,256 + ABZR87_RS01255 0.26 -0.3
260,256 + ABZR87_RS01255 0.26 +0.0
260,256 + ABZR87_RS01255 0.26 +0.1
260,257 - ABZR87_RS01255 0.26 +0.2
260,257 - ABZR87_RS01255 0.26 -0.1
260,257 - ABZR87_RS01255 0.26 +0.4
260,257 - ABZR87_RS01255 0.26 +0.2
260,257 - ABZR87_RS01255 0.26 -0.2
260,257 - ABZR87_RS01255 0.26 -0.1
260,257 - ABZR87_RS01255 0.26 -0.4
260,257 - ABZR87_RS01255 0.26 +0.6
260,257 - ABZR87_RS01255 0.26 +0.5
260,257 - ABZR87_RS01255 0.26 +0.4
260,257 - ABZR87_RS01255 0.26 +0.3
260,257 - ABZR87_RS01255 0.26 -0.5
260,257 - ABZR87_RS01255 0.26 -0.1
260,257 - ABZR87_RS01255 0.26 +0.5
260,257 - ABZR87_RS01255 0.26 -0.6

Or see this region's nucleotide sequence