Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00565

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS00560 and ABZR87_RS00565 are separated by 13 nucleotidesABZR87_RS00565 and ABZR87_RS00570 are separated by 58 nucleotides ABZR87_RS00560: ABZR87_RS00560 - DNA-3-methyladenine glycosylase 2, at 114,923 to 116,398 _RS00560 ABZR87_RS00565: ABZR87_RS00565 - methylated-DNA--[protein]-cysteine S-methyltransferase, at 116,412 to 116,960 _RS00565 ABZR87_RS00570: ABZR87_RS00570 - DMT family transporter, at 117,019 to 117,951 _RS00570 Position (kb) 116 117Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 115.435 kb on + strand, within ABZR87_RS00560at 115.611 kb on - strand, within ABZR87_RS00560at 115.611 kb on - strand, within ABZR87_RS00560at 115.611 kb on - strand, within ABZR87_RS00560at 115.635 kb on - strand, within ABZR87_RS00560at 115.943 kb on + strand, within ABZR87_RS00560at 115.943 kb on + strand, within ABZR87_RS00560at 115.944 kb on - strand, within ABZR87_RS00560at 115.944 kb on - strand, within ABZR87_RS00560at 116.192 kb on + strand, within ABZR87_RS00560at 116.192 kb on + strand, within ABZR87_RS00560at 116.192 kb on + strand, within ABZR87_RS00560at 116.192 kb on + strand, within ABZR87_RS00560at 116.192 kb on + strand, within ABZR87_RS00560at 116.192 kb on + strand, within ABZR87_RS00560at 116.193 kb on - strand, within ABZR87_RS00560at 116.193 kb on - strand, within ABZR87_RS00560at 116.193 kb on - strand, within ABZR87_RS00560at 116.193 kb on - strand, within ABZR87_RS00560at 116.193 kb on - strand, within ABZR87_RS00560at 116.243 kb on + strand, within ABZR87_RS00560at 116.243 kb on + strand, within ABZR87_RS00560at 116.243 kb on + strand, within ABZR87_RS00560at 116.244 kb on - strand, within ABZR87_RS00560at 116.340 kb on - strandat 116.340 kb on - strandat 116.415 kb on + strandat 116.416 kb on - strandat 116.416 kb on - strandat 116.586 kb on + strand, within ABZR87_RS00565at 116.587 kb on - strand, within ABZR87_RS00565at 116.587 kb on - strand, within ABZR87_RS00565at 116.587 kb on - strand, within ABZR87_RS00565at 116.700 kb on + strand, within ABZR87_RS00565at 116.700 kb on + strand, within ABZR87_RS00565at 116.700 kb on + strand, within ABZR87_RS00565at 116.700 kb on + strand, within ABZR87_RS00565at 116.700 kb on + strand, within ABZR87_RS00565at 116.700 kb on + strand, within ABZR87_RS00565at 116.701 kb on - strand, within ABZR87_RS00565at 116.701 kb on - strand, within ABZR87_RS00565at 116.701 kb on - strand, within ABZR87_RS00565at 116.701 kb on - strand, within ABZR87_RS00565at 116.701 kb on - strand, within ABZR87_RS00565at 116.958 kb on + strandat 116.958 kb on + strandat 117.116 kb on + strand, within ABZR87_RS00570at 117.116 kb on + strand, within ABZR87_RS00570at 117.279 kb on + strand, within ABZR87_RS00570at 117.279 kb on + strand, within ABZR87_RS00570at 117.280 kb on - strand, within ABZR87_RS00570at 117.297 kb on + strand, within ABZR87_RS00570at 117.298 kb on - strand, within ABZR87_RS00570at 117.298 kb on - strand, within ABZR87_RS00570at 117.298 kb on - strand, within ABZR87_RS00570at 117.298 kb on - strand, within ABZR87_RS00570at 117.298 kb on - strand, within ABZR87_RS00570at 117.348 kb on + strand, within ABZR87_RS00570at 117.348 kb on + strand, within ABZR87_RS00570at 117.348 kb on + strand, within ABZR87_RS00570at 117.348 kb on + strand, within ABZR87_RS00570at 117.348 kb on + strand, within ABZR87_RS00570at 117.349 kb on - strand, within ABZR87_RS00570at 117.349 kb on - strand, within ABZR87_RS00570at 117.349 kb on - strand, within ABZR87_RS00570at 117.349 kb on - strand, within ABZR87_RS00570at 117.349 kb on - strand, within ABZR87_RS00570at 117.349 kb on - strand, within ABZR87_RS00570at 117.500 kb on - strand, within ABZR87_RS00570at 117.517 kb on + strand, within ABZR87_RS00570at 117.517 kb on + strand, within ABZR87_RS00570at 117.518 kb on - strand, within ABZR87_RS00570at 117.518 kb on - strand, within ABZR87_RS00570at 117.518 kb on - strand, within ABZR87_RS00570at 117.518 kb on - strand, within ABZR87_RS00570at 117.518 kb on - strand, within ABZR87_RS00570at 117.518 kb on - strand, within ABZR87_RS00570at 117.607 kb on + strand, within ABZR87_RS00570at 117.607 kb on + strand, within ABZR87_RS00570at 117.691 kb on + strand, within ABZR87_RS00570at 117.691 kb on + strand, within ABZR87_RS00570at 117.691 kb on + strand, within ABZR87_RS00570at 117.692 kb on - strand, within ABZR87_RS00570at 117.692 kb on - strand, within ABZR87_RS00570at 117.692 kb on - strand, within ABZR87_RS00570at 117.692 kb on - strand, within ABZR87_RS00570at 117.692 kb on - strand, within ABZR87_RS00570at 117.692 kb on - strand, within ABZR87_RS00570

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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115,435 + ABZR87_RS00560 0.35 -0.6
115,611 - ABZR87_RS00560 0.47 +0.7
115,611 - ABZR87_RS00560 0.47 +0.0
115,611 - ABZR87_RS00560 0.47 +0.0
115,635 - ABZR87_RS00560 0.48 -1.9
115,943 + ABZR87_RS00560 0.69 +0.5
115,943 + ABZR87_RS00560 0.69 +0.1
115,944 - ABZR87_RS00560 0.69 -0.5
115,944 - ABZR87_RS00560 0.69 +0.7
116,192 + ABZR87_RS00560 0.86 -1.3
116,192 + ABZR87_RS00560 0.86 -0.2
116,192 + ABZR87_RS00560 0.86 +0.3
116,192 + ABZR87_RS00560 0.86 -0.6
116,192 + ABZR87_RS00560 0.86 -0.6
116,192 + ABZR87_RS00560 0.86 -3.2
116,193 - ABZR87_RS00560 0.86 -0.9
116,193 - ABZR87_RS00560 0.86 +1.2
116,193 - ABZR87_RS00560 0.86 +0.6
116,193 - ABZR87_RS00560 0.86 -0.5
116,193 - ABZR87_RS00560 0.86 +0.8
116,243 + ABZR87_RS00560 0.89 +0.2
116,243 + ABZR87_RS00560 0.89 -0.7
116,243 + ABZR87_RS00560 0.89 +0.3
116,244 - ABZR87_RS00560 0.89 -0.8
116,340 - +0.3
116,340 - -0.2
116,415 + +0.4
116,416 - -1.7
116,416 - +0.3
116,586 + ABZR87_RS00565 0.32 -0.6
116,587 - ABZR87_RS00565 0.32 +0.2
116,587 - ABZR87_RS00565 0.32 +0.2
116,587 - ABZR87_RS00565 0.32 +0.1
116,700 + ABZR87_RS00565 0.52 +0.4
116,700 + ABZR87_RS00565 0.52 +0.0
116,700 + ABZR87_RS00565 0.52 -0.5
116,700 + ABZR87_RS00565 0.52 +0.6
116,700 + ABZR87_RS00565 0.52 +0.2
116,700 + ABZR87_RS00565 0.52 +0.7
116,701 - ABZR87_RS00565 0.53 +0.2
116,701 - ABZR87_RS00565 0.53 -1.4
116,701 - ABZR87_RS00565 0.53 -0.0
116,701 - ABZR87_RS00565 0.53 +0.2
116,701 - ABZR87_RS00565 0.53 -1.4
116,958 + -0.3
116,958 + -0.4
117,116 + ABZR87_RS00570 0.10 +0.2
117,116 + ABZR87_RS00570 0.10 +0.5
117,279 + ABZR87_RS00570 0.28 +0.2
117,279 + ABZR87_RS00570 0.28 +0.7
117,280 - ABZR87_RS00570 0.28 -0.3
117,297 + ABZR87_RS00570 0.30 +0.4
117,298 - ABZR87_RS00570 0.30 +0.7
117,298 - ABZR87_RS00570 0.30 +0.8
117,298 - ABZR87_RS00570 0.30 -0.3
117,298 - ABZR87_RS00570 0.30 +0.0
117,298 - ABZR87_RS00570 0.30 +0.3
117,348 + ABZR87_RS00570 0.35 +0.1
117,348 + ABZR87_RS00570 0.35 -0.4
117,348 + ABZR87_RS00570 0.35 +0.1
117,348 + ABZR87_RS00570 0.35 -0.3
117,348 + ABZR87_RS00570 0.35 +1.2
117,349 - ABZR87_RS00570 0.35 +0.7
117,349 - ABZR87_RS00570 0.35 +0.5
117,349 - ABZR87_RS00570 0.35 -0.3
117,349 - ABZR87_RS00570 0.35 +0.3
117,349 - ABZR87_RS00570 0.35 +0.2
117,349 - ABZR87_RS00570 0.35 +0.6
117,500 - ABZR87_RS00570 0.52 -0.2
117,517 + ABZR87_RS00570 0.53 -0.4
117,517 + ABZR87_RS00570 0.53 +2.2
117,518 - ABZR87_RS00570 0.53 +0.6
117,518 - ABZR87_RS00570 0.53 +0.4
117,518 - ABZR87_RS00570 0.53 +0.0
117,518 - ABZR87_RS00570 0.53 -0.0
117,518 - ABZR87_RS00570 0.53 +0.7
117,518 - ABZR87_RS00570 0.53 -0.3
117,607 + ABZR87_RS00570 0.63 +0.0
117,607 + ABZR87_RS00570 0.63 +0.3
117,691 + ABZR87_RS00570 0.72 +0.5
117,691 + ABZR87_RS00570 0.72 +0.6
117,691 + ABZR87_RS00570 0.72 +0.2
117,692 - ABZR87_RS00570 0.72 +0.7
117,692 - ABZR87_RS00570 0.72 +0.9
117,692 - ABZR87_RS00570 0.72 -0.4
117,692 - ABZR87_RS00570 0.72 +0.7
117,692 - ABZR87_RS00570 0.72 +0.8
117,692 - ABZR87_RS00570 0.72 -0.5

Or see this region's nucleotide sequence