Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4136 and Shewana3_4137 are separated by 12 nucleotides Shewana3_4137 and Shewana3_4138 are separated by 225 nucleotides Shewana3_4138 and Shewana3_4139 are separated by 9 nucleotides
Shewana3_4136: Shewana3_4136 - F0F1 ATP synthase subunit A (RefSeq), at 4,969,076 to 4,969,870
_4136
Shewana3_4137: Shewana3_4137 - ATP synthase I chain (RefSeq), at 4,969,883 to 4,970,266
_4137
Shewana3_4138: Shewana3_4138 - chromosome segregation DNA-binding protein (RefSeq), at 4,970,492 to 4,971,370
_4138
Shewana3_4139: Shewana3_4139 - chromosome segregation ATPase (RefSeq), at 4,971,380 to 4,972,168
_4139
Position (kb)
4970
4971
4972 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4970.609 kb on - strand, within Shewana3_4138 at 4970.617 kb on + strand, within Shewana3_4138 at 4970.625 kb on - strand, within Shewana3_4138 at 4970.720 kb on - strand, within Shewana3_4138 at 4970.789 kb on + strand, within Shewana3_4138 at 4970.797 kb on - strand, within Shewana3_4138 at 4970.822 kb on - strand, within Shewana3_4138 at 4970.828 kb on - strand, within Shewana3_4138 at 4971.339 kb on - strand at 4971.352 kb on - strand at 4971.395 kb on - strand at 4971.518 kb on - strand, within Shewana3_4139 at 4971.607 kb on + strand, within Shewana3_4139 at 4971.691 kb on + strand, within Shewana3_4139 at 4971.714 kb on - strand, within Shewana3_4139 at 4972.028 kb on - strand, within Shewana3_4139 at 4972.178 kb on - strand at 4972.178 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 4,970,609 - Shewana3_4138 0.13 +0.6 4,970,617 + Shewana3_4138 0.14 -1.9 4,970,625 - Shewana3_4138 0.15 +0.4 4,970,720 - Shewana3_4138 0.26 -0.2 4,970,789 + Shewana3_4138 0.34 -1.4 4,970,797 - Shewana3_4138 0.35 +0.3 4,970,822 - Shewana3_4138 0.38 +0.3 4,970,828 - Shewana3_4138 0.38 +2.1 4,971,339 - -0.1 4,971,352 - -0.7 4,971,395 - +0.1 4,971,518 - Shewana3_4139 0.17 -0.0 4,971,607 + Shewana3_4139 0.29 +2.6 4,971,691 + Shewana3_4139 0.39 -0.2 4,971,714 - Shewana3_4139 0.42 -0.2 4,972,028 - Shewana3_4139 0.82 +0.4 4,972,178 - -1.3 4,972,178 - +0.3
Or see this region's nucleotide sequence