Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4123 and Shewana3_4124 are separated by 167 nucleotides Shewana3_4124 and Shewana3_4125 are separated by 79 nucleotides
Shewana3_4123: Shewana3_4123 - naphthoate synthase (RefSeq), at 4,955,202 to 4,956,104
_4123
Shewana3_4124: Shewana3_4124 - hypothetical protein (RefSeq), at 4,956,272 to 4,956,475
_4124
Shewana3_4125: Shewana3_4125 - glucosamine--fructose-6-phosphate aminotransferase (RefSeq), at 4,956,555 to 4,958,384
_4125
Position (kb)
4956
4957 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4955.303 kb on - strand, within Shewana3_4123 at 4955.359 kb on - strand, within Shewana3_4123 at 4955.414 kb on - strand, within Shewana3_4123 at 4955.431 kb on - strand, within Shewana3_4123 at 4955.624 kb on + strand, within Shewana3_4123 at 4955.739 kb on + strand, within Shewana3_4123 at 4955.739 kb on + strand, within Shewana3_4123 at 4955.747 kb on - strand, within Shewana3_4123 at 4955.747 kb on - strand, within Shewana3_4123 at 4955.749 kb on + strand, within Shewana3_4123 at 4955.806 kb on + strand, within Shewana3_4123 at 4955.814 kb on - strand, within Shewana3_4123 at 4955.814 kb on - strand, within Shewana3_4123 at 4955.886 kb on + strand, within Shewana3_4123 at 4955.950 kb on + strand, within Shewana3_4123 at 4956.015 kb on + strand at 4956.015 kb on + strand at 4956.023 kb on - strand at 4956.032 kb on + strand at 4956.036 kb on + strand at 4956.135 kb on - strand at 4956.362 kb on + strand, within Shewana3_4124 at 4956.470 kb on + strand at 4956.499 kb on - strand at 4956.506 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 4,955,303 - Shewana3_4123 0.11 -1.4 4,955,359 - Shewana3_4123 0.17 -1.3 4,955,414 - Shewana3_4123 0.23 +1.6 4,955,431 - Shewana3_4123 0.25 -0.6 4,955,624 + Shewana3_4123 0.47 -0.3 4,955,739 + Shewana3_4123 0.59 -0.2 4,955,739 + Shewana3_4123 0.59 +0.5 4,955,747 - Shewana3_4123 0.60 +0.7 4,955,747 - Shewana3_4123 0.60 -1.0 4,955,749 + Shewana3_4123 0.61 -0.4 4,955,806 + Shewana3_4123 0.67 +0.2 4,955,814 - Shewana3_4123 0.68 +0.1 4,955,814 - Shewana3_4123 0.68 +2.5 4,955,886 + Shewana3_4123 0.76 -0.4 4,955,950 + Shewana3_4123 0.83 -0.7 4,956,015 + +0.6 4,956,015 + +0.2 4,956,023 - +0.3 4,956,032 + +0.1 4,956,036 + +0.4 4,956,135 - -0.1 4,956,362 + Shewana3_4124 0.44 -2.6 4,956,470 + +0.6 4,956,499 - -0.6 4,956,506 - -1.2
Or see this region's nucleotide sequence