Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4061 and Shewana3_4062 are separated by 49 nucleotides Shewana3_4062 and Shewana3_4063 are separated by 106 nucleotides Shewana3_4063 and Shewana3_4064 are separated by 144 nucleotides
Shewana3_4061: Shewana3_4061 - hypothetical protein (RefSeq), at 4,880,912 to 4,881,862
_4061
Shewana3_4062: Shewana3_4062 - hypothetical protein (RefSeq), at 4,881,912 to 4,882,064
_4062
Shewana3_4063: Shewana3_4063 - LuxR family transcriptional regulator (RefSeq), at 4,882,171 to 4,882,716
_4063
Shewana3_4064: Shewana3_4064 - hypothetical protein (RefSeq), at 4,882,861 to 4,884,063
_4064
Position (kb)
4881
4882
4883 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4880.983 kb on - strand at 4880.983 kb on - strand at 4881.042 kb on + strand, within Shewana3_4061 at 4881.050 kb on - strand, within Shewana3_4061 at 4881.088 kb on + strand, within Shewana3_4061 at 4881.131 kb on + strand, within Shewana3_4061 at 4881.234 kb on + strand, within Shewana3_4061 at 4881.370 kb on + strand, within Shewana3_4061 at 4881.466 kb on - strand, within Shewana3_4061 at 4881.536 kb on - strand, within Shewana3_4061 at 4881.553 kb on + strand, within Shewana3_4061 at 4881.556 kb on - strand, within Shewana3_4061 at 4881.607 kb on + strand, within Shewana3_4061 at 4881.852 kb on + strand at 4881.909 kb on + strand at 4881.917 kb on - strand at 4881.917 kb on - strand at 4881.917 kb on - strand at 4881.917 kb on - strand at 4881.987 kb on + strand, within Shewana3_4062 at 4882.172 kb on - strand at 4882.533 kb on - strand, within Shewana3_4063 at 4882.605 kb on - strand, within Shewana3_4063 at 4882.681 kb on - strand at 4882.681 kb on - strand at 4882.812 kb on - strand at 4882.968 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 4,880,983 - -0.2 4,880,983 - -0.1 4,881,042 + Shewana3_4061 0.14 -0.2 4,881,050 - Shewana3_4061 0.15 -1.5 4,881,088 + Shewana3_4061 0.19 -0.1 4,881,131 + Shewana3_4061 0.23 -0.7 4,881,234 + Shewana3_4061 0.34 -0.0 4,881,370 + Shewana3_4061 0.48 -0.9 4,881,466 - Shewana3_4061 0.58 -1.2 4,881,536 - Shewana3_4061 0.66 +0.4 4,881,553 + Shewana3_4061 0.67 -0.3 4,881,556 - Shewana3_4061 0.68 -1.2 4,881,607 + Shewana3_4061 0.73 +0.0 4,881,852 + -0.8 4,881,909 + -0.5 4,881,917 - -0.5 4,881,917 - -1.8 4,881,917 - -2.2 4,881,917 - +1.9 4,881,987 + Shewana3_4062 0.49 +0.8 4,882,172 - -0.8 4,882,533 - Shewana3_4063 0.66 -0.8 4,882,605 - Shewana3_4063 0.79 -0.2 4,882,681 - -0.0 4,882,681 - -0.8 4,882,812 - -0.2 4,882,968 - -0.4
Or see this region's nucleotide sequence