Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4059 and Shewana3_4060 are separated by 208 nucleotides Shewana3_4060 and Shewana3_4061 are separated by 266 nucleotides
Shewana3_4059: Shewana3_4059 - XRE family transcriptional regulator (RefSeq), at 4,878,341 to 4,879,873
_4059
Shewana3_4060: Shewana3_4060 - malate synthase (RefSeq), at 4,880,082 to 4,880,645
_4060
Shewana3_4061: Shewana3_4061 - hypothetical protein (RefSeq), at 4,880,912 to 4,881,862
_4061
Position (kb)
4880
4881 Strain fitness (log2 ratio)
-1
0
1 at 4879.141 kb on - strand, within Shewana3_4059 at 4879.151 kb on + strand, within Shewana3_4059 at 4879.284 kb on - strand, within Shewana3_4059 at 4879.373 kb on + strand, within Shewana3_4059 at 4879.601 kb on - strand, within Shewana3_4059 at 4879.856 kb on + strand at 4879.955 kb on + strand at 4879.979 kb on + strand at 4879.979 kb on + strand at 4879.979 kb on + strand at 4879.981 kb on + strand at 4880.065 kb on + strand at 4880.067 kb on + strand at 4880.072 kb on + strand at 4880.080 kb on - strand at 4880.231 kb on + strand, within Shewana3_4060 at 4880.260 kb on + strand, within Shewana3_4060 at 4880.353 kb on + strand, within Shewana3_4060 at 4880.387 kb on - strand, within Shewana3_4060 at 4880.396 kb on - strand, within Shewana3_4060 at 4880.435 kb on - strand, within Shewana3_4060 at 4880.435 kb on - strand, within Shewana3_4060 at 4880.435 kb on - strand, within Shewana3_4060 at 4880.909 kb on - strand at 4880.983 kb on - strand at 4880.983 kb on - strand at 4881.042 kb on + strand, within Shewana3_4061 at 4881.050 kb on - strand, within Shewana3_4061 at 4881.088 kb on + strand, within Shewana3_4061 at 4881.131 kb on + strand, within Shewana3_4061 at 4881.234 kb on + strand, within Shewana3_4061 at 4881.370 kb on + strand, within Shewana3_4061 at 4881.466 kb on - strand, within Shewana3_4061 at 4881.536 kb on - strand, within Shewana3_4061 at 4881.553 kb on + strand, within Shewana3_4061 at 4881.556 kb on - strand, within Shewana3_4061 at 4881.607 kb on + strand, within Shewana3_4061
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 4,879,141 - Shewana3_4059 0.52 -0.2 4,879,151 + Shewana3_4059 0.53 -1.3 4,879,284 - Shewana3_4059 0.62 -0.7 4,879,373 + Shewana3_4059 0.67 -0.3 4,879,601 - Shewana3_4059 0.82 -0.5 4,879,856 + -0.2 4,879,955 + +0.1 4,879,979 + -0.0 4,879,979 + -0.2 4,879,979 + -0.7 4,879,981 + -1.4 4,880,065 + +0.0 4,880,067 + +0.2 4,880,072 + -0.6 4,880,080 - -0.1 4,880,231 + Shewana3_4060 0.26 -1.2 4,880,260 + Shewana3_4060 0.32 -0.2 4,880,353 + Shewana3_4060 0.48 -0.1 4,880,387 - Shewana3_4060 0.54 -0.4 4,880,396 - Shewana3_4060 0.56 +0.0 4,880,435 - Shewana3_4060 0.63 -0.4 4,880,435 - Shewana3_4060 0.63 -0.2 4,880,435 - Shewana3_4060 0.63 +0.1 4,880,909 - +0.0 4,880,983 - -0.2 4,880,983 - -0.1 4,881,042 + Shewana3_4061 0.14 -0.2 4,881,050 - Shewana3_4061 0.15 -1.5 4,881,088 + Shewana3_4061 0.19 -0.1 4,881,131 + Shewana3_4061 0.23 -0.7 4,881,234 + Shewana3_4061 0.34 -0.0 4,881,370 + Shewana3_4061 0.48 -0.9 4,881,466 - Shewana3_4061 0.58 -1.2 4,881,536 - Shewana3_4061 0.66 +0.4 4,881,553 + Shewana3_4061 0.67 -0.3 4,881,556 - Shewana3_4061 0.68 -1.2 4,881,607 + Shewana3_4061 0.73 +0.0
Or see this region's nucleotide sequence