Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4050
Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.05 mg/ml |
---|---|---|---|---|---|
remove | |||||
4,865,307 | - | Shewana3_4049 | 0.26 | +0.1 | |
4,865,323 | - | Shewana3_4049 | 0.28 | -0.4 | |
4,865,407 | + | Shewana3_4049 | 0.41 | -0.8 | |
4,865,419 | + | Shewana3_4049 | 0.43 | -0.3 | |
4,865,866 | - | +0.2 | |||
4,865,866 | - | -0.2 | |||
4,865,881 | - | -2.5 | |||
4,865,881 | - | +0.4 | |||
4,866,144 | + | Shewana3_4050 | 0.15 | -0.3 | |
4,866,156 | + | Shewana3_4050 | 0.17 | -0.7 | |
4,866,212 | + | Shewana3_4050 | 0.28 | -0.3 | |
4,866,225 | - | Shewana3_4050 | 0.30 | -0.7 | |
4,866,230 | - | Shewana3_4050 | 0.31 | +0.0 | |
4,866,423 | - | Shewana3_4050 | 0.67 | -0.5 | |
4,866,423 | - | Shewana3_4050 | 0.67 | -0.3 | |
4,866,423 | - | Shewana3_4050 | 0.67 | -0.3 | |
4,866,515 | - | Shewana3_4050 | 0.85 | -0.2 | |
4,866,599 | - | -0.5 | |||
4,866,625 | + | -0.1 | |||
4,866,633 | - | -1.0 | |||
4,866,721 | + | -0.1 | |||
4,866,743 | - | +0.1 | |||
4,866,805 | - | -0.5 | |||
4,866,912 | + | -0.8 | |||
4,867,196 | + | Shewana3_4051 | 0.23 | -3.0 | |
4,867,286 | - | Shewana3_4051 | 0.28 | -1.3 |
Or see this region's nucleotide sequence