Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3888 and Shewana3_3889 are separated by 262 nucleotides Shewana3_3889 and Shewana3_3890 overlap by 1 nucleotides Shewana3_3890 and Shewana3_3891 are separated by 24 nucleotides Shewana3_3891 and Shewana3_3892 are separated by 48 nucleotides
Shewana3_3888: Shewana3_3888 - ribulose-5-phosphate 3-epimerase (RefSeq), at 4,667,789 to 4,668,466
_3888
Shewana3_3889: Shewana3_3889 - hypothetical protein (RefSeq), at 4,668,729 to 4,669,094
_3889
Shewana3_3890: Shewana3_3890 - hypothetical protein (RefSeq), at 4,669,094 to 4,669,279
_3890
Shewana3_3891: Shewana3_3891 - DNA adenine methylase (RefSeq), at 4,669,304 to 4,670,143
_3891
Shewana3_3892: Shewana3_3892 - sporulation domain-containing protein (RefSeq), at 4,670,192 to 4,671,607
_3892
Position (kb) 4669
4670
4671 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4668.822 kb on + strand, within Shewana3_3889 at 4668.836 kb on - strand, within Shewana3_3889 at 4668.945 kb on - strand, within Shewana3_3889 at 4668.955 kb on - strand, within Shewana3_3889 at 4669.123 kb on - strand, within Shewana3_3890 at 4669.234 kb on - strand, within Shewana3_3890 at 4669.253 kb on - strand, within Shewana3_3890 at 4670.066 kb on - strand at 4670.362 kb on - strand, within Shewana3_3892 at 4670.419 kb on + strand, within Shewana3_3892 at 4670.424 kb on + strand, within Shewana3_3892 at 4670.432 kb on - strand, within Shewana3_3892 at 4670.573 kb on - strand, within Shewana3_3892 at 4670.602 kb on - strand, within Shewana3_3892 at 4670.743 kb on + strand, within Shewana3_3892 at 4670.892 kb on + strand, within Shewana3_3892 at 4670.915 kb on - strand, within Shewana3_3892 at 4670.999 kb on - strand, within Shewana3_3892 at 4671.074 kb on - strand, within Shewana3_3892 at 4671.092 kb on - strand, within Shewana3_3892 at 4671.122 kb on + strand, within Shewana3_3892
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 4,668,822 + Shewana3_3889 0.25 -0.9 4,668,836 - Shewana3_3889 0.29 -0.3 4,668,945 - Shewana3_3889 0.59 +0.2 4,668,955 - Shewana3_3889 0.62 -2.2 4,669,123 - Shewana3_3890 0.16 -2.4 4,669,234 - Shewana3_3890 0.75 -1.2 4,669,253 - Shewana3_3890 0.85 -1.4 4,670,066 - -0.3 4,670,362 - Shewana3_3892 0.12 +2.0 4,670,419 + Shewana3_3892 0.16 -0.1 4,670,424 + Shewana3_3892 0.16 -0.3 4,670,432 - Shewana3_3892 0.17 -0.5 4,670,573 - Shewana3_3892 0.27 -0.5 4,670,602 - Shewana3_3892 0.29 -0.8 4,670,743 + Shewana3_3892 0.39 +2.4 4,670,892 + Shewana3_3892 0.49 -0.7 4,670,915 - Shewana3_3892 0.51 -0.4 4,670,999 - Shewana3_3892 0.57 -0.2 4,671,074 - Shewana3_3892 0.62 -1.3 4,671,092 - Shewana3_3892 0.64 +0.4 4,671,122 + Shewana3_3892 0.66 -3.8
Or see this region's nucleotide sequence