Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3814 and Shewana3_3815 are separated by 170 nucleotides Shewana3_3815 and Shewana3_3816 are separated by 176 nucleotides Shewana3_3816 and Shewana3_3817 are separated by 83 nucleotides
Shewana3_3814: Shewana3_3814 - AMP-dependent synthetase and ligase (RefSeq), at 4,580,334 to 4,581,998
_3814
Shewana3_3815: Shewana3_3815 - CaCA family Na(+)/Ca(+) antiporter (RefSeq), at 4,582,169 to 4,583,119
_3815
Shewana3_3816: Shewana3_3816 - TPR repeat-containing protein (RefSeq), at 4,583,296 to 4,584,000
_3816
Shewana3_3817: Shewana3_3817 - putative signal transduction histidine kinase (RefSeq), at 4,584,084 to 4,585,163
_3817
Position (kb)
4582
4583
4584 Strain fitness (log2 ratio)
-1
0
1 at 4581.228 kb on + strand, within Shewana3_3814 at 4581.237 kb on - strand, within Shewana3_3814 at 4581.294 kb on - strand, within Shewana3_3814 at 4581.294 kb on - strand, within Shewana3_3814 at 4581.338 kb on - strand, within Shewana3_3814 at 4581.404 kb on + strand, within Shewana3_3814 at 4581.404 kb on + strand, within Shewana3_3814 at 4581.412 kb on - strand, within Shewana3_3814 at 4581.412 kb on - strand, within Shewana3_3814 at 4581.419 kb on + strand, within Shewana3_3814 at 4581.551 kb on + strand, within Shewana3_3814 at 4581.559 kb on - strand, within Shewana3_3814 at 4581.575 kb on - strand, within Shewana3_3814 at 4581.575 kb on - strand, within Shewana3_3814 at 4581.623 kb on + strand, within Shewana3_3814 at 4581.623 kb on + strand, within Shewana3_3814 at 4581.661 kb on - strand, within Shewana3_3814 at 4581.700 kb on + strand, within Shewana3_3814 at 4581.800 kb on - strand, within Shewana3_3814 at 4581.800 kb on - strand, within Shewana3_3814 at 4581.868 kb on - strand at 4581.902 kb on + strand at 4582.028 kb on + strand at 4582.036 kb on - strand at 4582.039 kb on - strand at 4582.118 kb on + strand at 4582.118 kb on + strand at 4582.118 kb on + strand at 4582.234 kb on - strand at 4582.254 kb on + strand at 4582.254 kb on + strand at 4582.262 kb on - strand at 4582.383 kb on - strand, within Shewana3_3815 at 4582.817 kb on - strand, within Shewana3_3815 at 4582.889 kb on - strand, within Shewana3_3815 at 4583.007 kb on + strand, within Shewana3_3815 at 4583.071 kb on - strand at 4583.326 kb on + strand at 4583.466 kb on - strand, within Shewana3_3816 at 4583.531 kb on - strand, within Shewana3_3816 at 4583.838 kb on - strand, within Shewana3_3816 at 4584.095 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 4,581,228 + Shewana3_3814 0.54 +0.5 4,581,237 - Shewana3_3814 0.54 -0.5 4,581,294 - Shewana3_3814 0.58 -1.6 4,581,294 - Shewana3_3814 0.58 -0.8 4,581,338 - Shewana3_3814 0.60 -1.1 4,581,404 + Shewana3_3814 0.64 -0.9 4,581,404 + Shewana3_3814 0.64 +0.8 4,581,412 - Shewana3_3814 0.65 +0.8 4,581,412 - Shewana3_3814 0.65 -0.6 4,581,419 + Shewana3_3814 0.65 -1.5 4,581,551 + Shewana3_3814 0.73 +0.2 4,581,559 - Shewana3_3814 0.74 -0.2 4,581,575 - Shewana3_3814 0.75 +0.4 4,581,575 - Shewana3_3814 0.75 +0.1 4,581,623 + Shewana3_3814 0.77 +0.7 4,581,623 + Shewana3_3814 0.77 -0.7 4,581,661 - Shewana3_3814 0.80 +0.3 4,581,700 + Shewana3_3814 0.82 +0.4 4,581,800 - Shewana3_3814 0.88 +0.6 4,581,800 - Shewana3_3814 0.88 -0.5 4,581,868 - -0.2 4,581,902 + -0.6 4,582,028 + +0.0 4,582,036 - -0.1 4,582,039 - +0.2 4,582,118 + -0.5 4,582,118 + +0.2 4,582,118 + -0.1 4,582,234 - +0.5 4,582,254 + +0.7 4,582,254 + +0.7 4,582,262 - +0.7 4,582,383 - Shewana3_3815 0.23 +1.5 4,582,817 - Shewana3_3815 0.68 +0.3 4,582,889 - Shewana3_3815 0.76 +1.0 4,583,007 + Shewana3_3815 0.88 +0.5 4,583,071 - -0.2 4,583,326 + +0.1 4,583,466 - Shewana3_3816 0.24 -0.5 4,583,531 - Shewana3_3816 0.33 -0.6 4,583,838 - Shewana3_3816 0.77 -0.9 4,584,095 - -0.7
Or see this region's nucleotide sequence