Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3720 and Shewana3_3721 are separated by 73 nucleotides Shewana3_3721 and Shewana3_3722 are separated by 356 nucleotides Shewana3_3722 and Shewana3_3723 are separated by 317 nucleotides Shewana3_3723 and Shewana3_3724 are separated by 130 nucleotides
Shewana3_3720: Shewana3_3720 - hypothetical protein (RefSeq), at 4,463,658 to 4,464,698
_3720
Shewana3_3721: Shewana3_3721 - phosphoesterase, PA-phosphatase related (RefSeq), at 4,464,772 to 4,465,284
_3721
Shewana3_3722: Shewana3_3722 - uroporphyrinogen decarboxylase (RefSeq), at 4,465,641 to 4,465,895
_3722
Shewana3_3723: Shewana3_3723 - ribonuclease activity regulator protein RraA (RefSeq), at 4,466,213 to 4,466,698
_3723
Shewana3_3724: Shewana3_3724 - arginase/agmatinase/formiminoglutamase (RefSeq), at 4,466,829 to 4,467,881
_3724
Position (kb)
4465
4466 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4464.672 kb on + strand at 4464.672 kb on + strand at 4464.672 kb on + strand at 4464.680 kb on - strand at 4464.715 kb on - strand at 4465.119 kb on + strand, within Shewana3_3721 at 4465.119 kb on + strand, within Shewana3_3721 at 4465.127 kb on - strand, within Shewana3_3721 at 4465.127 kb on - strand, within Shewana3_3721 at 4465.145 kb on - strand, within Shewana3_3721 at 4465.204 kb on + strand, within Shewana3_3721 at 4465.204 kb on + strand, within Shewana3_3721 at 4465.212 kb on - strand, within Shewana3_3721 at 4465.212 kb on - strand, within Shewana3_3721 at 4465.212 kb on - strand, within Shewana3_3721 at 4465.222 kb on - strand, within Shewana3_3721 at 4465.409 kb on - strand at 4465.414 kb on - strand at 4465.457 kb on + strand at 4465.457 kb on + strand at 4465.465 kb on - strand at 4465.770 kb on - strand, within Shewana3_3722 at 4465.897 kb on + strand at 4465.913 kb on - strand at 4466.108 kb on + strand at 4466.226 kb on + strand at 4466.226 kb on + strand at 4466.226 kb on + strand at 4466.234 kb on - strand at 4466.234 kb on - strand at 4466.339 kb on + strand, within Shewana3_3723 at 4466.348 kb on + strand, within Shewana3_3723 at 4466.624 kb on - strand, within Shewana3_3723 at 4466.688 kb on + strand at 4466.798 kb on + strand at 4466.876 kb on - strand at 4466.878 kb on + strand at 4466.878 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 4,464,672 + -0.2 4,464,672 + -1.6 4,464,672 + +0.3 4,464,680 - -1.2 4,464,715 - -0.2 4,465,119 + Shewana3_3721 0.68 -1.7 4,465,119 + Shewana3_3721 0.68 -1.8 4,465,127 - Shewana3_3721 0.69 +0.2 4,465,127 - Shewana3_3721 0.69 -0.1 4,465,145 - Shewana3_3721 0.73 -0.5 4,465,204 + Shewana3_3721 0.84 -1.6 4,465,204 + Shewana3_3721 0.84 -2.7 4,465,212 - Shewana3_3721 0.86 +1.1 4,465,212 - Shewana3_3721 0.86 +0.3 4,465,212 - Shewana3_3721 0.86 -0.3 4,465,222 - Shewana3_3721 0.88 -0.2 4,465,409 - +0.5 4,465,414 - +0.0 4,465,457 + +0.1 4,465,457 + -0.3 4,465,465 - -0.1 4,465,770 - Shewana3_3722 0.51 +0.7 4,465,897 + -0.3 4,465,913 - -1.0 4,466,108 + -0.8 4,466,226 + +0.1 4,466,226 + -0.6 4,466,226 + +0.0 4,466,234 - -0.7 4,466,234 - -0.4 4,466,339 + Shewana3_3723 0.26 +0.3 4,466,348 + Shewana3_3723 0.28 +0.3 4,466,624 - Shewana3_3723 0.85 -1.4 4,466,688 + -0.0 4,466,798 + -0.4 4,466,876 - +0.6 4,466,878 + -0.2 4,466,878 + +3.5
Or see this region's nucleotide sequence