Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3695

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3694 and Shewana3_3695 are separated by 110 nucleotidesShewana3_3695 and Shewana3_3696 are separated by 85 nucleotides Shewana3_3694: Shewana3_3694 - no description, at 4,434,506 to 4,435,650 _3694 Shewana3_3695: Shewana3_3695 - LysR family transcriptional regulator (RefSeq), at 4,435,761 to 4,436,672 _3695 Shewana3_3696: Shewana3_3696 - histidine kinase (RefSeq), at 4,436,758 to 4,438,536 _3696 Position (kb) 4435 4436 4437Strain fitness (log2 ratio) -3 -2 -1 0 1at 4434.797 kb on - strand, within Shewana3_3694at 4434.852 kb on + strand, within Shewana3_3694at 4434.865 kb on - strand, within Shewana3_3694at 4434.889 kb on + strand, within Shewana3_3694at 4434.897 kb on - strand, within Shewana3_3694at 4434.903 kb on + strand, within Shewana3_3694at 4434.923 kb on - strand, within Shewana3_3694at 4435.040 kb on + strand, within Shewana3_3694at 4435.145 kb on - strand, within Shewana3_3694at 4435.145 kb on - strand, within Shewana3_3694at 4435.217 kb on - strand, within Shewana3_3694at 4435.258 kb on + strand, within Shewana3_3694at 4435.267 kb on + strand, within Shewana3_3694at 4435.273 kb on - strand, within Shewana3_3694at 4435.495 kb on - strand, within Shewana3_3694at 4435.561 kb on - strandat 4435.625 kb on + strandat 4435.627 kb on + strandat 4435.627 kb on + strandat 4435.633 kb on - strandat 4435.635 kb on - strandat 4435.793 kb on + strandat 4435.830 kb on + strandat 4435.843 kb on - strandat 4435.972 kb on - strand, within Shewana3_3695at 4436.049 kb on + strand, within Shewana3_3695at 4436.191 kb on + strand, within Shewana3_3695at 4436.301 kb on - strand, within Shewana3_3695at 4436.439 kb on - strand, within Shewana3_3695at 4436.503 kb on - strand, within Shewana3_3695at 4436.518 kb on + strand, within Shewana3_3695at 4436.667 kb on + strandat 4436.667 kb on - strandat 4436.675 kb on - strandat 4436.675 kb on - strandat 4436.762 kb on + strandat 4436.763 kb on - strandat 4436.770 kb on - strandat 4436.770 kb on - strandat 4436.953 kb on + strand, within Shewana3_3696at 4436.961 kb on - strand, within Shewana3_3696at 4437.000 kb on + strand, within Shewana3_3696at 4437.035 kb on + strand, within Shewana3_3696at 4437.043 kb on - strand, within Shewana3_3696at 4437.080 kb on + strand, within Shewana3_3696at 4437.172 kb on + strand, within Shewana3_3696at 4437.236 kb on + strand, within Shewana3_3696at 4437.282 kb on - strand, within Shewana3_3696at 4437.282 kb on - strand, within Shewana3_3696at 4437.393 kb on - strand, within Shewana3_3696at 4437.401 kb on + strand, within Shewana3_3696at 4437.432 kb on - strand, within Shewana3_3696at 4437.432 kb on - strand, within Shewana3_3696at 4437.551 kb on + strand, within Shewana3_3696at 4437.584 kb on - strand, within Shewana3_3696

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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4,434,797 - Shewana3_3694 0.25 -0.1
4,434,852 + Shewana3_3694 0.30 -0.6
4,434,865 - Shewana3_3694 0.31 +0.1
4,434,889 + Shewana3_3694 0.33 +0.2
4,434,897 - Shewana3_3694 0.34 +0.2
4,434,903 + Shewana3_3694 0.35 -0.6
4,434,923 - Shewana3_3694 0.36 -0.5
4,435,040 + Shewana3_3694 0.47 -0.8
4,435,145 - Shewana3_3694 0.56 +0.5
4,435,145 - Shewana3_3694 0.56 -0.9
4,435,217 - Shewana3_3694 0.62 -0.2
4,435,258 + Shewana3_3694 0.66 -2.4
4,435,267 + Shewana3_3694 0.66 +0.0
4,435,273 - Shewana3_3694 0.67 +0.7
4,435,495 - Shewana3_3694 0.86 -0.3
4,435,561 - -0.6
4,435,625 + -0.7
4,435,627 + +0.0
4,435,627 + -0.7
4,435,633 - +0.5
4,435,635 - -0.7
4,435,793 + -1.0
4,435,830 + +0.4
4,435,843 - -1.1
4,435,972 - Shewana3_3695 0.23 -3.1
4,436,049 + Shewana3_3695 0.32 -1.6
4,436,191 + Shewana3_3695 0.47 -1.2
4,436,301 - Shewana3_3695 0.59 -0.2
4,436,439 - Shewana3_3695 0.74 -2.0
4,436,503 - Shewana3_3695 0.81 -1.7
4,436,518 + Shewana3_3695 0.83 -2.1
4,436,667 + -0.5
4,436,667 - +0.2
4,436,675 - -0.2
4,436,675 - +0.2
4,436,762 + +0.4
4,436,763 - -0.3
4,436,770 - -0.2
4,436,770 - -0.7
4,436,953 + Shewana3_3696 0.11 -0.6
4,436,961 - Shewana3_3696 0.11 -0.4
4,437,000 + Shewana3_3696 0.14 -0.5
4,437,035 + Shewana3_3696 0.16 -0.2
4,437,043 - Shewana3_3696 0.16 +0.9
4,437,080 + Shewana3_3696 0.18 -1.0
4,437,172 + Shewana3_3696 0.23 +0.5
4,437,236 + Shewana3_3696 0.27 -0.1
4,437,282 - Shewana3_3696 0.29 -0.9
4,437,282 - Shewana3_3696 0.29 +0.2
4,437,393 - Shewana3_3696 0.36 +0.1
4,437,401 + Shewana3_3696 0.36 -0.4
4,437,432 - Shewana3_3696 0.38 -0.0
4,437,432 - Shewana3_3696 0.38 -0.0
4,437,551 + Shewana3_3696 0.45 -1.5
4,437,584 - Shewana3_3696 0.46 +0.2

Or see this region's nucleotide sequence