Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3677 and Shewana3_3678 are separated by 11 nucleotides Shewana3_3678 and Shewana3_3679 are separated by 487 nucleotides Shewana3_3679 and Shewana3_3680 are separated by 109 nucleotides
Shewana3_3677: Shewana3_3677 - SPFH domain-containing protein/band 7 family protein (RefSeq), at 4,416,454 to 4,417,389
_3677
Shewana3_3678: Shewana3_3678 - hypothetical protein (RefSeq), at 4,417,401 to 4,417,871
_3678
Shewana3_3679: Shewana3_3679 - hypothetical protein (RefSeq), at 4,418,359 to 4,419,111
_3679
Shewana3_3680: Shewana3_3680 - Uridine phosphorylase (EC 2.4.2.3) (from data) , at 4,419,221 to 4,419,979
_3680
Position (kb)
4418
4419
4420 Strain fitness (log2 ratio)
-2
-1
0
1 at 4417.494 kb on - strand, within Shewana3_3678 at 4417.661 kb on + strand, within Shewana3_3678 at 4417.903 kb on + strand at 4418.232 kb on + strand at 4418.299 kb on - strand at 4418.311 kb on + strand at 4418.314 kb on + strand at 4418.381 kb on - strand at 4418.429 kb on + strand at 4418.555 kb on + strand, within Shewana3_3679 at 4418.565 kb on + strand, within Shewana3_3679 at 4418.584 kb on + strand, within Shewana3_3679 at 4418.592 kb on - strand, within Shewana3_3679 at 4418.703 kb on + strand, within Shewana3_3679 at 4418.719 kb on - strand, within Shewana3_3679 at 4418.743 kb on - strand, within Shewana3_3679 at 4419.065 kb on - strand at 4419.193 kb on - strand at 4419.198 kb on + strand at 4419.204 kb on - strand at 4419.333 kb on - strand, within Shewana3_3680 at 4419.414 kb on + strand, within Shewana3_3680 at 4419.422 kb on - strand, within Shewana3_3680 at 4419.472 kb on + strand, within Shewana3_3680 at 4419.493 kb on - strand, within Shewana3_3680 at 4419.613 kb on - strand, within Shewana3_3680 at 4419.694 kb on - strand, within Shewana3_3680 at 4419.705 kb on - strand, within Shewana3_3680 at 4419.705 kb on - strand, within Shewana3_3680 at 4419.705 kb on - strand, within Shewana3_3680 at 4419.804 kb on + strand, within Shewana3_3680 at 4419.864 kb on + strand, within Shewana3_3680 at 4420.055 kb on - strand at 4420.061 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 4,417,494 - Shewana3_3678 0.20 -0.5 4,417,661 + Shewana3_3678 0.55 -2.4 4,417,903 + +0.5 4,418,232 + -0.6 4,418,299 - -0.5 4,418,311 + +0.3 4,418,314 + -0.1 4,418,381 - -1.0 4,418,429 + -0.0 4,418,555 + Shewana3_3679 0.26 -1.0 4,418,565 + Shewana3_3679 0.27 +0.1 4,418,584 + Shewana3_3679 0.30 -1.9 4,418,592 - Shewana3_3679 0.31 -1.2 4,418,703 + Shewana3_3679 0.46 -1.4 4,418,719 - Shewana3_3679 0.48 -2.3 4,418,743 - Shewana3_3679 0.51 -0.8 4,419,065 - -1.5 4,419,193 - -0.2 4,419,198 + -0.7 4,419,204 - -0.5 4,419,333 - Shewana3_3680 0.15 +0.7 4,419,414 + Shewana3_3680 0.25 -0.6 4,419,422 - Shewana3_3680 0.26 +0.1 4,419,472 + Shewana3_3680 0.33 -0.7 4,419,493 - Shewana3_3680 0.36 +0.8 4,419,613 - Shewana3_3680 0.52 +0.8 4,419,694 - Shewana3_3680 0.62 +0.6 4,419,705 - Shewana3_3680 0.64 +0.4 4,419,705 - Shewana3_3680 0.64 +0.6 4,419,705 - Shewana3_3680 0.64 +1.5 4,419,804 + Shewana3_3680 0.77 -0.9 4,419,864 + Shewana3_3680 0.85 -0.7 4,420,055 - +0.2 4,420,061 - +0.2
Or see this region's nucleotide sequence