Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3668 and Shewana3_3669 are separated by 213 nucleotides Shewana3_3669 and rpmE are separated by 511 nucleotides rpmE and Shewana3_3671 are separated by 165 nucleotides
Shewana3_3668: Shewana3_3668 - regulatory protein CsrD (RefSeq), at 4,404,484 to 4,406,394
_3668
Shewana3_3669: Shewana3_3669 - malic enzyme, NAD-binding (RefSeq), at 4,406,608 to 4,407,852
_3669
Shewana3_3670: rpmE - 50S ribosomal protein L31 (RefSeq), at 4,408,364 to 4,408,576
rpmE
Shewana3_3671: Shewana3_3671 - response regulator receiver protein (RefSeq), at 4,408,742 to 4,409,917
_3671
Position (kb)
4406
4407
4408 Strain fitness (log2 ratio)
-2
-1
0
1 at 4405.624 kb on + strand, within Shewana3_3668 at 4405.767 kb on + strand, within Shewana3_3668 at 4405.767 kb on + strand, within Shewana3_3668 at 4405.775 kb on - strand, within Shewana3_3668 at 4405.775 kb on - strand, within Shewana3_3668 at 4405.775 kb on - strand, within Shewana3_3668 at 4405.847 kb on + strand, within Shewana3_3668 at 4406.078 kb on + strand, within Shewana3_3668 at 4406.078 kb on + strand, within Shewana3_3668 at 4406.086 kb on - strand, within Shewana3_3668 at 4406.118 kb on - strand, within Shewana3_3668 at 4406.197 kb on + strand, within Shewana3_3668 at 4406.509 kb on - strand at 4406.583 kb on + strand at 4406.592 kb on - strand at 4406.592 kb on - strand at 4406.623 kb on + strand at 4406.704 kb on + strand at 4406.820 kb on - strand, within Shewana3_3669 at 4406.870 kb on - strand, within Shewana3_3669 at 4406.870 kb on - strand, within Shewana3_3669 at 4406.870 kb on - strand, within Shewana3_3669 at 4406.870 kb on - strand, within Shewana3_3669 at 4406.870 kb on - strand, within Shewana3_3669 at 4407.203 kb on + strand, within Shewana3_3669 at 4407.296 kb on + strand, within Shewana3_3669 at 4407.664 kb on + strand, within Shewana3_3669 at 4407.850 kb on + strand at 4407.890 kb on - strand at 4407.928 kb on + strand at 4407.946 kb on - strand at 4407.951 kb on + strand at 4407.951 kb on + strand at 4408.099 kb on + strand at 4408.823 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 4,405,624 + Shewana3_3668 0.60 -1.0 4,405,767 + Shewana3_3668 0.67 -0.3 4,405,767 + Shewana3_3668 0.67 -0.5 4,405,775 - Shewana3_3668 0.68 +1.7 4,405,775 - Shewana3_3668 0.68 -1.8 4,405,775 - Shewana3_3668 0.68 +0.3 4,405,847 + Shewana3_3668 0.71 -1.9 4,406,078 + Shewana3_3668 0.83 -2.3 4,406,078 + Shewana3_3668 0.83 -2.0 4,406,086 - Shewana3_3668 0.84 -1.3 4,406,118 - Shewana3_3668 0.86 -1.6 4,406,197 + Shewana3_3668 0.90 -0.9 4,406,509 - +0.0 4,406,583 + -0.3 4,406,592 - -0.8 4,406,592 - +0.3 4,406,623 + +0.2 4,406,704 + +0.1 4,406,820 - Shewana3_3669 0.17 +0.8 4,406,870 - Shewana3_3669 0.21 +0.2 4,406,870 - Shewana3_3669 0.21 -0.3 4,406,870 - Shewana3_3669 0.21 -0.4 4,406,870 - Shewana3_3669 0.21 -0.2 4,406,870 - Shewana3_3669 0.21 -0.3 4,407,203 + Shewana3_3669 0.48 -2.4 4,407,296 + Shewana3_3669 0.55 -2.5 4,407,664 + Shewana3_3669 0.85 +0.1 4,407,850 + +0.2 4,407,890 - -0.3 4,407,928 + -1.9 4,407,946 - -0.5 4,407,951 + -0.8 4,407,951 + -2.2 4,408,099 + -0.0 4,408,823 + -0.1
Or see this region's nucleotide sequence