Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3614 and Shewana3_3615 are separated by 204 nucleotides Shewana3_3615 and Shewana3_3616 are separated by 107 nucleotides Shewana3_3616 and Shewana3_3617 are separated by 122 nucleotides
Shewana3_3614: Shewana3_3614 - cystathionine gamma-synthase (RefSeq), at 4,340,806 to 4,341,987
_3614
Shewana3_3615: Shewana3_3615 - transcriptional repressor protein MetJ (RefSeq), at 4,342,192 to 4,342,506
_3615
Shewana3_3616: Shewana3_3616 - hypothetical protein (RefSeq), at 4,342,614 to 4,343,357
_3616
Shewana3_3617: Shewana3_3617 - polysulphide reductase, NrfD (RefSeq), at 4,343,480 to 4,344,424
_3617
Position (kb)
4342
4343 Strain fitness (log2 ratio)
-2
-1
0
1 at 4341.199 kb on + strand, within Shewana3_3614 at 4341.222 kb on + strand, within Shewana3_3614 at 4341.254 kb on - strand, within Shewana3_3614 at 4341.279 kb on + strand, within Shewana3_3614 at 4341.287 kb on - strand, within Shewana3_3614 at 4341.326 kb on - strand, within Shewana3_3614 at 4341.346 kb on + strand, within Shewana3_3614 at 4341.351 kb on + strand, within Shewana3_3614 at 4341.434 kb on + strand, within Shewana3_3614 at 4341.441 kb on + strand, within Shewana3_3614 at 4341.532 kb on - strand, within Shewana3_3614 at 4341.542 kb on + strand, within Shewana3_3614 at 4341.572 kb on - strand, within Shewana3_3614 at 4341.579 kb on - strand, within Shewana3_3614 at 4341.756 kb on + strand, within Shewana3_3614 at 4341.787 kb on + strand, within Shewana3_3614 at 4341.910 kb on - strand at 4341.939 kb on + strand at 4341.994 kb on + strand at 4342.141 kb on + strand at 4342.234 kb on - strand, within Shewana3_3615 at 4342.334 kb on + strand, within Shewana3_3615 at 4342.470 kb on - strand, within Shewana3_3615 at 4342.509 kb on - strand at 4342.672 kb on - strand at 4342.696 kb on + strand, within Shewana3_3616 at 4342.704 kb on - strand, within Shewana3_3616 at 4342.704 kb on - strand, within Shewana3_3616 at 4342.727 kb on + strand, within Shewana3_3616 at 4342.730 kb on + strand, within Shewana3_3616 at 4342.858 kb on - strand, within Shewana3_3616 at 4343.109 kb on + strand, within Shewana3_3616 at 4343.230 kb on + strand, within Shewana3_3616 at 4343.230 kb on + strand, within Shewana3_3616 at 4343.287 kb on + strand at 4343.287 kb on + strand at 4343.287 kb on + strand at 4343.287 kb on + strand at 4343.295 kb on - strand at 4343.295 kb on - strand at 4343.295 kb on - strand at 4343.311 kb on + strand at 4343.492 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 4,341,199 + Shewana3_3614 0.33 -0.2 4,341,222 + Shewana3_3614 0.35 +0.4 4,341,254 - Shewana3_3614 0.38 -0.7 4,341,279 + Shewana3_3614 0.40 +0.3 4,341,287 - Shewana3_3614 0.41 -0.4 4,341,326 - Shewana3_3614 0.44 -0.2 4,341,346 + Shewana3_3614 0.46 +0.1 4,341,351 + Shewana3_3614 0.46 +0.2 4,341,434 + Shewana3_3614 0.53 +0.0 4,341,441 + Shewana3_3614 0.54 -0.7 4,341,532 - Shewana3_3614 0.61 +0.1 4,341,542 + Shewana3_3614 0.62 -1.0 4,341,572 - Shewana3_3614 0.65 +0.7 4,341,579 - Shewana3_3614 0.65 -0.1 4,341,756 + Shewana3_3614 0.80 -1.1 4,341,787 + Shewana3_3614 0.83 +0.4 4,341,910 - -0.3 4,341,939 + -0.3 4,341,994 + +0.7 4,342,141 + -0.8 4,342,234 - Shewana3_3615 0.13 -2.2 4,342,334 + Shewana3_3615 0.45 -1.6 4,342,470 - Shewana3_3615 0.88 +0.1 4,342,509 - -0.6 4,342,672 - +0.2 4,342,696 + Shewana3_3616 0.11 +0.4 4,342,704 - Shewana3_3616 0.12 -0.2 4,342,704 - Shewana3_3616 0.12 +0.3 4,342,727 + Shewana3_3616 0.15 -0.5 4,342,730 + Shewana3_3616 0.16 -0.5 4,342,858 - Shewana3_3616 0.33 -0.7 4,343,109 + Shewana3_3616 0.67 -0.0 4,343,230 + Shewana3_3616 0.83 +0.4 4,343,230 + Shewana3_3616 0.83 +0.1 4,343,287 + -0.1 4,343,287 + +1.0 4,343,287 + -0.3 4,343,287 + -0.1 4,343,295 - -0.4 4,343,295 - -0.5 4,343,295 - -0.4 4,343,311 + -0.3 4,343,492 + +0.7
Or see this region's nucleotide sequence