Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3604

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3603 and Shewana3_3604 are separated by 24 nucleotides Shewana3_3603: Shewana3_3603 - TonB family protein (RefSeq), at 4,326,613 to 4,327,728 _3603 Shewana3_3604: Shewana3_3604 - hypothetical protein (RefSeq), at 4,327,753 to 4,328,112 _3604 Position (kb) 4327 4328 4329Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4327.141 kb on - strand, within Shewana3_3603at 4327.150 kb on + strand, within Shewana3_3603at 4327.164 kb on - strand, within Shewana3_3603at 4327.213 kb on + strand, within Shewana3_3603at 4327.218 kb on + strand, within Shewana3_3603at 4327.221 kb on - strand, within Shewana3_3603at 4327.223 kb on + strand, within Shewana3_3603at 4327.494 kb on + strand, within Shewana3_3603at 4327.500 kb on + strand, within Shewana3_3603at 4327.508 kb on - strand, within Shewana3_3603at 4327.508 kb on - strand, within Shewana3_3603at 4327.676 kb on - strandat 4327.824 kb on - strand, within Shewana3_3604at 4327.874 kb on + strand, within Shewana3_3604at 4328.112 kb on + strandat 4328.127 kb on - strandat 4328.193 kb on + strandat 4328.200 kb on - strandat 4328.208 kb on - strandat 4328.265 kb on - strandat 4328.319 kb on + strandat 4328.410 kb on - strandat 4328.567 kb on + strandat 4328.581 kb on + strandat 4328.588 kb on + strandat 4328.635 kb on - strandat 4328.640 kb on - strandat 4328.652 kb on + strandat 4328.652 kb on + strandat 4328.724 kb on + strandat 4328.732 kb on - strandat 4328.749 kb on - strandat 4328.754 kb on + strandat 4328.772 kb on - strandat 4328.773 kb on + strandat 4328.785 kb on - strandat 4328.791 kb on - strandat 4328.847 kb on - strandat 4328.869 kb on - strandat 4328.882 kb on - strandat 4328.924 kb on + strandat 4328.996 kb on - strandat 4329.006 kb on + strandat 4329.006 kb on + strandat 4329.006 kb on + strandat 4329.006 kb on + strandat 4329.006 kb on + strandat 4329.006 kb on + strandat 4329.014 kb on - strandat 4329.014 kb on - strandat 4329.014 kb on - strandat 4329.014 kb on - strandat 4329.014 kb on - strandat 4329.014 kb on - strandat 4329.014 kb on - strandat 4329.014 kb on - strandat 4329.014 kb on - strandat 4329.014 kb on - strandat 4329.014 kb on - strandat 4329.014 kb on - strandat 4329.025 kb on + strandat 4329.033 kb on - strandat 4329.042 kb on + strandat 4329.042 kb on + strandat 4329.050 kb on - strandat 4329.050 kb on - strandat 4329.050 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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4,327,141 - Shewana3_3603 0.47 -0.8
4,327,150 + Shewana3_3603 0.48 +1.0
4,327,164 - Shewana3_3603 0.49 -1.1
4,327,213 + Shewana3_3603 0.54 -3.5
4,327,218 + Shewana3_3603 0.54 -0.8
4,327,221 - Shewana3_3603 0.54 -2.7
4,327,223 + Shewana3_3603 0.55 -2.4
4,327,494 + Shewana3_3603 0.79 +0.1
4,327,500 + Shewana3_3603 0.79 +0.2
4,327,508 - Shewana3_3603 0.80 -0.2
4,327,508 - Shewana3_3603 0.80 -0.8
4,327,676 - -1.2
4,327,824 - Shewana3_3604 0.20 -1.2
4,327,874 + Shewana3_3604 0.34 -2.1
4,328,112 + -1.1
4,328,127 - -0.1
4,328,193 + -1.0
4,328,200 - -1.2
4,328,208 - -2.4
4,328,265 - -0.8
4,328,319 + -0.6
4,328,410 - -2.0
4,328,567 + +1.7
4,328,581 + -2.2
4,328,588 + -1.4
4,328,635 - -0.5
4,328,640 - -0.0
4,328,652 + -1.0
4,328,652 + -0.9
4,328,724 + -0.3
4,328,732 - +0.2
4,328,749 - +0.9
4,328,754 + -0.1
4,328,772 - -0.4
4,328,773 + +2.7
4,328,785 - -0.2
4,328,791 - -0.4
4,328,847 - -0.3
4,328,869 - +0.1
4,328,882 - +0.3
4,328,924 + -1.3
4,328,996 - +0.3
4,329,006 + +1.1
4,329,006 + +0.4
4,329,006 + +0.7
4,329,006 + -0.1
4,329,006 + +2.7
4,329,006 + +0.1
4,329,014 - +0.1
4,329,014 - -1.9
4,329,014 - -0.4
4,329,014 - -0.4
4,329,014 - -0.2
4,329,014 - -0.9
4,329,014 - +0.3
4,329,014 - -0.8
4,329,014 - -0.8
4,329,014 - +0.3
4,329,014 - -0.1
4,329,014 - -1.3
4,329,025 + +0.1
4,329,033 - -0.2
4,329,042 + +2.7
4,329,042 + -0.8
4,329,050 - -0.7
4,329,050 - -1.3
4,329,050 - +0.5

Or see this region's nucleotide sequence