Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3585

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3584 and Shewana3_3585 are separated by 65 nucleotidesShewana3_3585 and Shewana3_3586 are separated by 450 nucleotides Shewana3_3584: Shewana3_3584 - MltD domain-containing protein (RefSeq), at 4,300,980 to 4,302,404 _3584 Shewana3_3585: Shewana3_3585 - hypothetical protein (RefSeq), at 4,302,470 to 4,303,843 _3585 Shewana3_3586: Shewana3_3586 - DNA-binding transcriptional regulator YidZ (RefSeq), at 4,304,294 to 4,305,259 _3586 Position (kb) 4302 4303 4304Strain fitness (log2 ratio) -3 -2 -1 0 1at 4301.518 kb on - strand, within Shewana3_3584at 4301.536 kb on + strand, within Shewana3_3584at 4301.564 kb on - strand, within Shewana3_3584at 4301.589 kb on - strand, within Shewana3_3584at 4301.597 kb on - strand, within Shewana3_3584at 4301.597 kb on - strand, within Shewana3_3584at 4301.737 kb on + strand, within Shewana3_3584at 4301.861 kb on - strand, within Shewana3_3584at 4302.129 kb on - strand, within Shewana3_3584at 4302.172 kb on + strand, within Shewana3_3584at 4302.224 kb on - strand, within Shewana3_3584at 4302.468 kb on + strandat 4302.490 kb on + strandat 4302.600 kb on + strandat 4302.636 kb on + strand, within Shewana3_3585at 4302.636 kb on + strand, within Shewana3_3585at 4302.644 kb on + strand, within Shewana3_3585at 4302.644 kb on - strand, within Shewana3_3585at 4302.951 kb on - strand, within Shewana3_3585at 4303.228 kb on + strand, within Shewana3_3585at 4303.251 kb on + strand, within Shewana3_3585at 4303.259 kb on - strand, within Shewana3_3585at 4303.342 kb on - strand, within Shewana3_3585at 4303.390 kb on + strand, within Shewana3_3585at 4303.457 kb on - strand, within Shewana3_3585at 4303.610 kb on - strand, within Shewana3_3585at 4303.621 kb on + strand, within Shewana3_3585at 4304.199 kb on - strandat 4304.238 kb on + strandat 4304.452 kb on - strand, within Shewana3_3586at 4304.540 kb on - strand, within Shewana3_3586at 4304.566 kb on - strand, within Shewana3_3586at 4304.566 kb on - strandat 4304.596 kb on + strand, within Shewana3_3586at 4304.724 kb on - strand, within Shewana3_3586

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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4,301,518 - Shewana3_3584 0.38 -0.4
4,301,536 + Shewana3_3584 0.39 -1.0
4,301,564 - Shewana3_3584 0.41 -0.4
4,301,589 - Shewana3_3584 0.43 -1.1
4,301,597 - Shewana3_3584 0.43 +0.1
4,301,597 - Shewana3_3584 0.43 +0.4
4,301,737 + Shewana3_3584 0.53 +0.1
4,301,861 - Shewana3_3584 0.62 -0.8
4,302,129 - Shewana3_3584 0.81 -1.1
4,302,172 + Shewana3_3584 0.84 +0.0
4,302,224 - Shewana3_3584 0.87 +0.0
4,302,468 + -0.8
4,302,490 + +0.4
4,302,600 + -1.1
4,302,636 + Shewana3_3585 0.12 -0.2
4,302,636 + Shewana3_3585 0.12 -0.6
4,302,644 + Shewana3_3585 0.13 -0.2
4,302,644 - Shewana3_3585 0.13 -0.5
4,302,951 - Shewana3_3585 0.35 -1.1
4,303,228 + Shewana3_3585 0.55 -0.4
4,303,251 + Shewana3_3585 0.57 -2.3
4,303,259 - Shewana3_3585 0.57 -0.8
4,303,342 - Shewana3_3585 0.63 -1.7
4,303,390 + Shewana3_3585 0.67 -0.2
4,303,457 - Shewana3_3585 0.72 -1.9
4,303,610 - Shewana3_3585 0.83 -1.4
4,303,621 + Shewana3_3585 0.84 -2.0
4,304,199 - -0.8
4,304,238 + -0.1
4,304,452 - Shewana3_3586 0.16 +0.1
4,304,540 - Shewana3_3586 0.25 -0.7
4,304,566 - Shewana3_3586 0.28 -1.0
4,304,566 - +1.1
4,304,596 + Shewana3_3586 0.31 -0.2
4,304,724 - Shewana3_3586 0.45 -3.3

Or see this region's nucleotide sequence