Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3532 and Shewana3_3533 are separated by 309 nucleotides Shewana3_3533 and Shewana3_3534 are separated by 36 nucleotides Shewana3_3534 and Shewana3_3535 are separated by 93 nucleotides
Shewana3_3532: Shewana3_3532 - nitrogen regulatory protein P-II (RefSeq), at 4,232,452 to 4,232,790
_3532
Shewana3_3533: Shewana3_3533 - isochorismatase hydrolase (RefSeq), at 4,233,100 to 4,233,642
_3533
Shewana3_3534: Shewana3_3534 - hypothetical protein (RefSeq), at 4,233,679 to 4,234,413
_3534
Shewana3_3535: Shewana3_3535 - hypothetical protein (RefSeq), at 4,234,507 to 4,235,316
_3535
Position (kb)
4233
4234
4235 Strain fitness (log2 ratio)
-2
-1
0
1 at 4232.694 kb on - strand, within Shewana3_3532 at 4232.783 kb on + strand at 4232.936 kb on + strand at 4232.942 kb on - strand at 4233.187 kb on - strand, within Shewana3_3533 at 4233.212 kb on - strand, within Shewana3_3533 at 4233.237 kb on + strand, within Shewana3_3533 at 4233.242 kb on + strand, within Shewana3_3533 at 4233.285 kb on + strand, within Shewana3_3533 at 4233.285 kb on + strand, within Shewana3_3533 at 4233.438 kb on - strand, within Shewana3_3533 at 4233.586 kb on - strand, within Shewana3_3533 at 4233.799 kb on - strand, within Shewana3_3534 at 4233.830 kb on + strand, within Shewana3_3534 at 4233.877 kb on - strand, within Shewana3_3534 at 4233.878 kb on - strand, within Shewana3_3534 at 4233.885 kb on + strand, within Shewana3_3534 at 4233.971 kb on + strand, within Shewana3_3534 at 4234.042 kb on + strand, within Shewana3_3534 at 4234.143 kb on + strand, within Shewana3_3534 at 4234.371 kb on + strand at 4234.490 kb on - strand at 4234.490 kb on - strand at 4234.622 kb on - strand, within Shewana3_3535 at 4234.871 kb on + strand, within Shewana3_3535 at 4234.910 kb on + strand, within Shewana3_3535 at 4234.979 kb on - strand, within Shewana3_3535 at 4234.980 kb on - strand, within Shewana3_3535 at 4235.204 kb on + strand, within Shewana3_3535 at 4235.411 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 4,232,694 - Shewana3_3532 0.71 +0.4 4,232,783 + -1.5 4,232,936 + +0.1 4,232,942 - -2.4 4,233,187 - Shewana3_3533 0.16 -0.6 4,233,212 - Shewana3_3533 0.21 -0.7 4,233,237 + Shewana3_3533 0.25 +0.0 4,233,242 + Shewana3_3533 0.26 -1.3 4,233,285 + Shewana3_3533 0.34 -1.0 4,233,285 + Shewana3_3533 0.34 -0.6 4,233,438 - Shewana3_3533 0.62 -1.8 4,233,586 - Shewana3_3533 0.90 -0.7 4,233,799 - Shewana3_3534 0.16 +0.1 4,233,830 + Shewana3_3534 0.21 +0.8 4,233,877 - Shewana3_3534 0.27 +0.4 4,233,878 - Shewana3_3534 0.27 +1.0 4,233,885 + Shewana3_3534 0.28 -0.5 4,233,971 + Shewana3_3534 0.40 -2.6 4,234,042 + Shewana3_3534 0.49 -0.7 4,234,143 + Shewana3_3534 0.63 -1.0 4,234,371 + -2.4 4,234,490 - -0.1 4,234,490 - +0.2 4,234,622 - Shewana3_3535 0.14 -0.0 4,234,871 + Shewana3_3535 0.45 +0.4 4,234,910 + Shewana3_3535 0.50 -1.2 4,234,979 - Shewana3_3535 0.58 -0.3 4,234,980 - Shewana3_3535 0.58 -2.7 4,235,204 + Shewana3_3535 0.86 -0.9 4,235,411 + +1.1
Or see this region's nucleotide sequence