Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3530

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3529 and Shewana3_3530 are separated by 118 nucleotidesShewana3_3530 and Shewana3_3531 are separated by 116 nucleotides Shewana3_3529: Shewana3_3529 - TPR repeat-containing protein (RefSeq), at 4,229,421 to 4,230,608 _3529 Shewana3_3530: Shewana3_3530 - hypothetical protein (RefSeq), at 4,230,727 to 4,231,074 _3530 Shewana3_3531: Shewana3_3531 - Rh family protein/ammonium transporter (RefSeq), at 4,231,191 to 4,232,441 _3531 Position (kb) 4230 4231 4232Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4229.760 kb on + strand, within Shewana3_3529at 4229.902 kb on + strand, within Shewana3_3529at 4229.912 kb on + strand, within Shewana3_3529at 4229.920 kb on - strand, within Shewana3_3529at 4230.062 kb on - strand, within Shewana3_3529at 4230.068 kb on + strand, within Shewana3_3529at 4230.084 kb on - strand, within Shewana3_3529at 4230.262 kb on - strand, within Shewana3_3529at 4230.521 kb on + strandat 4230.749 kb on + strandat 4230.817 kb on + strand, within Shewana3_3530at 4230.824 kb on + strand, within Shewana3_3530at 4230.824 kb on + strand, within Shewana3_3530at 4230.832 kb on - strand, within Shewana3_3530at 4230.847 kb on - strand, within Shewana3_3530at 4230.903 kb on - strand, within Shewana3_3530at 4230.933 kb on + strand, within Shewana3_3530at 4230.997 kb on + strand, within Shewana3_3530at 4230.997 kb on + strand, within Shewana3_3530at 4230.997 kb on + strand, within Shewana3_3530at 4230.998 kb on + strand, within Shewana3_3530at 4231.037 kb on + strand, within Shewana3_3530at 4231.045 kb on - strandat 4231.141 kb on + strandat 4231.152 kb on + strandat 4231.182 kb on - strandat 4231.250 kb on + strandat 4231.368 kb on + strand, within Shewana3_3531at 4231.386 kb on - strand, within Shewana3_3531at 4231.386 kb on - strand, within Shewana3_3531at 4231.482 kb on + strand, within Shewana3_3531at 4231.714 kb on + strand, within Shewana3_3531at 4231.714 kb on + strand, within Shewana3_3531at 4231.740 kb on + strand, within Shewana3_3531at 4231.793 kb on + strand, within Shewana3_3531at 4231.831 kb on + strand, within Shewana3_3531at 4231.863 kb on - strand, within Shewana3_3531at 4231.909 kb on + strand, within Shewana3_3531

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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4,229,760 + Shewana3_3529 0.29 -0.6
4,229,902 + Shewana3_3529 0.40 -1.1
4,229,912 + Shewana3_3529 0.41 -0.2
4,229,920 - Shewana3_3529 0.42 +0.0
4,230,062 - Shewana3_3529 0.54 +0.6
4,230,068 + Shewana3_3529 0.54 -0.8
4,230,084 - Shewana3_3529 0.56 -0.0
4,230,262 - Shewana3_3529 0.71 -0.4
4,230,521 + -0.4
4,230,749 + -0.6
4,230,817 + Shewana3_3530 0.26 -0.5
4,230,824 + Shewana3_3530 0.28 -1.0
4,230,824 + Shewana3_3530 0.28 -1.7
4,230,832 - Shewana3_3530 0.30 -0.6
4,230,847 - Shewana3_3530 0.34 -1.1
4,230,903 - Shewana3_3530 0.51 -0.2
4,230,933 + Shewana3_3530 0.59 -3.0
4,230,997 + Shewana3_3530 0.78 -0.9
4,230,997 + Shewana3_3530 0.78 -0.6
4,230,997 + Shewana3_3530 0.78 -0.8
4,230,998 + Shewana3_3530 0.78 -1.0
4,231,037 + Shewana3_3530 0.89 -0.3
4,231,045 - -0.6
4,231,141 + +0.8
4,231,152 + -0.1
4,231,182 - -0.0
4,231,250 + -1.2
4,231,368 + Shewana3_3531 0.14 -0.7
4,231,386 - Shewana3_3531 0.16 -0.1
4,231,386 - Shewana3_3531 0.16 +4.1
4,231,482 + Shewana3_3531 0.23 -0.2
4,231,714 + Shewana3_3531 0.42 -1.8
4,231,714 + Shewana3_3531 0.42 -2.0
4,231,740 + Shewana3_3531 0.44 +2.0
4,231,793 + Shewana3_3531 0.48 +0.1
4,231,831 + Shewana3_3531 0.51 -1.8
4,231,863 - Shewana3_3531 0.54 -0.6
4,231,909 + Shewana3_3531 0.57 -1.1

Or see this region's nucleotide sequence