Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3529 and Shewana3_3530 are separated by 118 nucleotides Shewana3_3530 and Shewana3_3531 are separated by 116 nucleotides
Shewana3_3529: Shewana3_3529 - TPR repeat-containing protein (RefSeq), at 4,229,421 to 4,230,608
_3529
Shewana3_3530: Shewana3_3530 - hypothetical protein (RefSeq), at 4,230,727 to 4,231,074
_3530
Shewana3_3531: Shewana3_3531 - Rh family protein/ammonium transporter (RefSeq), at 4,231,191 to 4,232,441
_3531
Position (kb)
4230
4231
4232 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 4229.760 kb on + strand, within Shewana3_3529 at 4229.902 kb on + strand, within Shewana3_3529 at 4229.912 kb on + strand, within Shewana3_3529 at 4229.920 kb on - strand, within Shewana3_3529 at 4230.062 kb on - strand, within Shewana3_3529 at 4230.068 kb on + strand, within Shewana3_3529 at 4230.084 kb on - strand, within Shewana3_3529 at 4230.262 kb on - strand, within Shewana3_3529 at 4230.521 kb on + strand at 4230.749 kb on + strand at 4230.817 kb on + strand, within Shewana3_3530 at 4230.824 kb on + strand, within Shewana3_3530 at 4230.824 kb on + strand, within Shewana3_3530 at 4230.832 kb on - strand, within Shewana3_3530 at 4230.847 kb on - strand, within Shewana3_3530 at 4230.903 kb on - strand, within Shewana3_3530 at 4230.933 kb on + strand, within Shewana3_3530 at 4230.997 kb on + strand, within Shewana3_3530 at 4230.997 kb on + strand, within Shewana3_3530 at 4230.997 kb on + strand, within Shewana3_3530 at 4230.998 kb on + strand, within Shewana3_3530 at 4231.037 kb on + strand, within Shewana3_3530 at 4231.045 kb on - strand at 4231.141 kb on + strand at 4231.152 kb on + strand at 4231.182 kb on - strand at 4231.250 kb on + strand at 4231.368 kb on + strand, within Shewana3_3531 at 4231.386 kb on - strand, within Shewana3_3531 at 4231.386 kb on - strand, within Shewana3_3531 at 4231.482 kb on + strand, within Shewana3_3531 at 4231.714 kb on + strand, within Shewana3_3531 at 4231.714 kb on + strand, within Shewana3_3531 at 4231.740 kb on + strand, within Shewana3_3531 at 4231.793 kb on + strand, within Shewana3_3531 at 4231.831 kb on + strand, within Shewana3_3531 at 4231.863 kb on - strand, within Shewana3_3531 at 4231.909 kb on + strand, within Shewana3_3531
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 4,229,760 + Shewana3_3529 0.29 -0.6 4,229,902 + Shewana3_3529 0.40 -1.1 4,229,912 + Shewana3_3529 0.41 -0.2 4,229,920 - Shewana3_3529 0.42 +0.0 4,230,062 - Shewana3_3529 0.54 +0.6 4,230,068 + Shewana3_3529 0.54 -0.8 4,230,084 - Shewana3_3529 0.56 -0.0 4,230,262 - Shewana3_3529 0.71 -0.4 4,230,521 + -0.4 4,230,749 + -0.6 4,230,817 + Shewana3_3530 0.26 -0.5 4,230,824 + Shewana3_3530 0.28 -1.0 4,230,824 + Shewana3_3530 0.28 -1.7 4,230,832 - Shewana3_3530 0.30 -0.6 4,230,847 - Shewana3_3530 0.34 -1.1 4,230,903 - Shewana3_3530 0.51 -0.2 4,230,933 + Shewana3_3530 0.59 -3.0 4,230,997 + Shewana3_3530 0.78 -0.9 4,230,997 + Shewana3_3530 0.78 -0.6 4,230,997 + Shewana3_3530 0.78 -0.8 4,230,998 + Shewana3_3530 0.78 -1.0 4,231,037 + Shewana3_3530 0.89 -0.3 4,231,045 - -0.6 4,231,141 + +0.8 4,231,152 + -0.1 4,231,182 - -0.0 4,231,250 + -1.2 4,231,368 + Shewana3_3531 0.14 -0.7 4,231,386 - Shewana3_3531 0.16 -0.1 4,231,386 - Shewana3_3531 0.16 +4.1 4,231,482 + Shewana3_3531 0.23 -0.2 4,231,714 + Shewana3_3531 0.42 -1.8 4,231,714 + Shewana3_3531 0.42 -2.0 4,231,740 + Shewana3_3531 0.44 +2.0 4,231,793 + Shewana3_3531 0.48 +0.1 4,231,831 + Shewana3_3531 0.51 -1.8 4,231,863 - Shewana3_3531 0.54 -0.6 4,231,909 + Shewana3_3531 0.57 -1.1
Or see this region's nucleotide sequence