Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3516 and Shewana3_3517 are separated by 77 nucleotides Shewana3_3517 and Shewana3_3518 are separated by 218 nucleotides Shewana3_3518 and Shewana3_3519 are separated by 6 nucleotides
Shewana3_3516: Shewana3_3516 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 4,217,066 to 4,218,700
_3516
Shewana3_3517: Shewana3_3517 - extracellular solute-binding protein (RefSeq), at 4,218,778 to 4,219,785
_3517
Shewana3_3518: Shewana3_3518 - hypothetical protein (RefSeq), at 4,220,004 to 4,220,426
_3518
Shewana3_3519: Shewana3_3519 - glutathione S-transferase domain-containing protein (RefSeq), at 4,220,433 to 4,221,029
_3519
Position (kb)
4218
4219
4220 Strain fitness (log2 ratio)
-1
0
1 at 4218.015 kb on - strand, within Shewana3_3516 at 4218.029 kb on + strand, within Shewana3_3516 at 4218.029 kb on + strand, within Shewana3_3516 at 4218.029 kb on + strand, within Shewana3_3516 at 4218.032 kb on - strand, within Shewana3_3516 at 4218.037 kb on - strand, within Shewana3_3516 at 4218.084 kb on + strand, within Shewana3_3516 at 4218.176 kb on - strand, within Shewana3_3516 at 4218.194 kb on + strand, within Shewana3_3516 at 4218.355 kb on - strand, within Shewana3_3516 at 4218.398 kb on + strand, within Shewana3_3516 at 4218.413 kb on + strand, within Shewana3_3516 at 4218.532 kb on + strand, within Shewana3_3516 at 4218.532 kb on + strand, within Shewana3_3516 at 4218.540 kb on - strand at 4218.540 kb on - strand at 4218.542 kb on + strand at 4218.575 kb on - strand at 4218.632 kb on + strand at 4218.707 kb on + strand at 4218.793 kb on + strand at 4218.860 kb on + strand at 4218.868 kb on - strand at 4218.868 kb on - strand at 4218.897 kb on - strand, within Shewana3_3517 at 4218.973 kb on - strand, within Shewana3_3517 at 4219.132 kb on + strand, within Shewana3_3517 at 4219.186 kb on - strand, within Shewana3_3517 at 4219.186 kb on - strand, within Shewana3_3517 at 4219.253 kb on + strand, within Shewana3_3517 at 4219.308 kb on - strand, within Shewana3_3517 at 4219.319 kb on - strand, within Shewana3_3517 at 4219.377 kb on - strand, within Shewana3_3517 at 4219.426 kb on + strand, within Shewana3_3517 at 4219.581 kb on - strand, within Shewana3_3517 at 4220.050 kb on + strand, within Shewana3_3518 at 4220.050 kb on + strand, within Shewana3_3518 at 4220.567 kb on - strand, within Shewana3_3519 at 4220.576 kb on - strand, within Shewana3_3519 at 4220.612 kb on - strand, within Shewana3_3519 at 4220.659 kb on + strand, within Shewana3_3519 at 4220.724 kb on + strand, within Shewana3_3519
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 4,218,015 - Shewana3_3516 0.58 -0.8 4,218,029 + Shewana3_3516 0.59 -0.6 4,218,029 + Shewana3_3516 0.59 -1.0 4,218,029 + Shewana3_3516 0.59 -1.3 4,218,032 - Shewana3_3516 0.59 +0.4 4,218,037 - Shewana3_3516 0.59 -1.2 4,218,084 + Shewana3_3516 0.62 -1.2 4,218,176 - Shewana3_3516 0.68 +0.7 4,218,194 + Shewana3_3516 0.69 -0.7 4,218,355 - Shewana3_3516 0.79 -0.6 4,218,398 + Shewana3_3516 0.81 -0.4 4,218,413 + Shewana3_3516 0.82 -0.7 4,218,532 + Shewana3_3516 0.90 -0.2 4,218,532 + Shewana3_3516 0.90 -1.2 4,218,540 - +0.3 4,218,540 - -0.5 4,218,542 + -0.1 4,218,575 - +1.4 4,218,632 + +0.4 4,218,707 + -0.0 4,218,793 + -0.1 4,218,860 + -0.2 4,218,868 - +0.8 4,218,868 - +0.3 4,218,897 - Shewana3_3517 0.12 +0.7 4,218,973 - Shewana3_3517 0.19 +0.1 4,219,132 + Shewana3_3517 0.35 -0.4 4,219,186 - Shewana3_3517 0.40 +0.2 4,219,186 - Shewana3_3517 0.40 -0.0 4,219,253 + Shewana3_3517 0.47 -1.5 4,219,308 - Shewana3_3517 0.53 -0.2 4,219,319 - Shewana3_3517 0.54 -0.3 4,219,377 - Shewana3_3517 0.59 -0.2 4,219,426 + Shewana3_3517 0.64 +0.6 4,219,581 - Shewana3_3517 0.80 -1.1 4,220,050 + Shewana3_3518 0.11 -1.4 4,220,050 + Shewana3_3518 0.11 -0.8 4,220,567 - Shewana3_3519 0.22 +1.2 4,220,576 - Shewana3_3519 0.24 -0.1 4,220,612 - Shewana3_3519 0.30 +1.5 4,220,659 + Shewana3_3519 0.38 -1.2 4,220,724 + Shewana3_3519 0.49 -1.4
Or see this region's nucleotide sequence