Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3384 and Shewana3_3385 are separated by 426 nucleotides Shewana3_3385 and Shewana3_3386 are separated by 459 nucleotides Shewana3_3386 and Shewana3_3387 are separated by 110 nucleotides
Shewana3_3384: Shewana3_3384 - ATP-dependent RNA helicase DbpA (RefSeq), at 4,055,553 to 4,056,992
_3384
Shewana3_3385: Shewana3_3385 - hypoxanthine phosphoribosyltransferase (RefSeq), at 4,057,419 to 4,058,276
_3385
Shewana3_3386: Shewana3_3386 - hypothetical protein (RefSeq), at 4,058,736 to 4,058,843
_3386
Shewana3_3387: Shewana3_3387 - hypothetical protein (RefSeq), at 4,058,954 to 4,059,406
_3387
Position (kb)
4057
4058
4059 Strain fitness (log2 ratio)
-2
-1
0
1 at 4056.707 kb on + strand, within Shewana3_3384 at 4056.707 kb on + strand, within Shewana3_3384 at 4056.707 kb on + strand, within Shewana3_3384 at 4056.715 kb on - strand, within Shewana3_3384 at 4056.715 kb on - strand, within Shewana3_3384 at 4056.737 kb on + strand, within Shewana3_3384 at 4056.798 kb on - strand, within Shewana3_3384 at 4056.879 kb on + strand at 4056.916 kb on - strand at 4056.988 kb on + strand at 4057.022 kb on + strand at 4057.063 kb on - strand at 4057.127 kb on - strand at 4057.409 kb on - strand at 4057.445 kb on + strand at 4057.696 kb on + strand, within Shewana3_3385 at 4057.821 kb on + strand, within Shewana3_3385 at 4057.830 kb on - strand, within Shewana3_3385 at 4057.896 kb on + strand, within Shewana3_3385 at 4058.290 kb on + strand at 4058.341 kb on - strand at 4058.371 kb on - strand at 4058.537 kb on + strand at 4058.537 kb on + strand at 4058.579 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 4,056,707 + Shewana3_3384 0.80 -0.6 4,056,707 + Shewana3_3384 0.80 -1.7 4,056,707 + Shewana3_3384 0.80 -0.5 4,056,715 - Shewana3_3384 0.81 -0.5 4,056,715 - Shewana3_3384 0.81 -1.3 4,056,737 + Shewana3_3384 0.82 -0.7 4,056,798 - Shewana3_3384 0.86 -1.8 4,056,879 + -0.8 4,056,916 - -0.3 4,056,988 + -0.5 4,057,022 + +0.9 4,057,063 - -0.1 4,057,127 - -1.1 4,057,409 - -0.7 4,057,445 + +0.4 4,057,696 + Shewana3_3385 0.32 +0.9 4,057,821 + Shewana3_3385 0.47 +0.6 4,057,830 - Shewana3_3385 0.48 +0.3 4,057,896 + Shewana3_3385 0.56 -0.8 4,058,290 + +0.1 4,058,341 - +1.0 4,058,371 - -0.6 4,058,537 + +0.0 4,058,537 + -0.6 4,058,579 + +0.2
Or see this region's nucleotide sequence