Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3380 and Shewana3_3381 are separated by 175 nucleotides Shewana3_3381 and Shewana3_3382 are separated by 200 nucleotides Shewana3_3382 and Shewana3_3383 are separated by 57 nucleotides
Shewana3_3380: Shewana3_3380 - glyoxalase/bleomycin resistance protein/dioxygenase (RefSeq), at 4,051,539 to 4,051,961
_3380
Shewana3_3381: Shewana3_3381 - hypothetical protein (RefSeq), at 4,052,137 to 4,052,664
_3381
Shewana3_3382: Shewana3_3382 - hypothetical protein (RefSeq), at 4,052,865 to 4,053,155
_3382
Shewana3_3383: Shewana3_3383 - TonB-dependent receptor, plug (RefSeq), at 4,053,213 to 4,055,489
_3383
Position (kb)
4052
4053
4054 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4051.873 kb on + strand, within Shewana3_3380 at 4051.885 kb on + strand, within Shewana3_3380 at 4051.885 kb on + strand, within Shewana3_3380 at 4051.900 kb on - strand, within Shewana3_3380 at 4052.363 kb on - strand, within Shewana3_3381 at 4052.912 kb on + strand, within Shewana3_3382 at 4052.961 kb on + strand, within Shewana3_3382 at 4053.000 kb on - strand, within Shewana3_3382 at 4053.046 kb on - strand, within Shewana3_3382 at 4053.135 kb on - strand at 4053.217 kb on + strand at 4053.227 kb on + strand at 4053.259 kb on + strand at 4053.718 kb on + strand, within Shewana3_3383 at 4053.726 kb on - strand, within Shewana3_3383 at 4053.788 kb on - strand, within Shewana3_3383 at 4053.939 kb on + strand, within Shewana3_3383 at 4053.947 kb on - strand, within Shewana3_3383 at 4053.947 kb on - strand, within Shewana3_3383 at 4053.999 kb on - strand, within Shewana3_3383 at 4054.134 kb on + strand, within Shewana3_3383 at 4054.151 kb on + strand, within Shewana3_3383
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 4,051,873 + Shewana3_3380 0.79 +0.0 4,051,885 + Shewana3_3380 0.82 -1.2 4,051,885 + Shewana3_3380 0.82 -0.5 4,051,900 - Shewana3_3380 0.85 -0.6 4,052,363 - Shewana3_3381 0.43 -0.4 4,052,912 + Shewana3_3382 0.16 -1.5 4,052,961 + Shewana3_3382 0.33 +1.3 4,053,000 - Shewana3_3382 0.46 +2.8 4,053,046 - Shewana3_3382 0.62 -0.3 4,053,135 - -0.0 4,053,217 + -0.9 4,053,227 + +0.9 4,053,259 + -0.5 4,053,718 + Shewana3_3383 0.22 -1.8 4,053,726 - Shewana3_3383 0.23 -0.8 4,053,788 - Shewana3_3383 0.25 -0.5 4,053,939 + Shewana3_3383 0.32 -1.6 4,053,947 - Shewana3_3383 0.32 +1.0 4,053,947 - Shewana3_3383 0.32 -0.3 4,053,999 - Shewana3_3383 0.35 -0.5 4,054,134 + Shewana3_3383 0.40 +0.1 4,054,151 + Shewana3_3383 0.41 -1.3
Or see this region's nucleotide sequence