Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3348 and Shewana3_3349 are separated by 240 nucleotides Shewana3_3349 and Shewana3_3350 are separated by 137 nucleotides
Shewana3_3348: Shewana3_3348 - Na+/H+ antiporter (RefSeq), at 4,016,318 to 4,017,787
_3348
Shewana3_3349: Shewana3_3349 - hypothetical protein (RefSeq), at 4,018,028 to 4,018,765
_3349
Shewana3_3350: Shewana3_3350 - fructose-1,6-bisphosphate aldolase (RefSeq), at 4,018,903 to 4,019,970
_3350
Position (kb)
4018
4019 Strain fitness (log2 ratio)
-1
0
1
2
3 at 4017.240 kb on - strand, within Shewana3_3348 at 4017.278 kb on + strand, within Shewana3_3348 at 4017.278 kb on + strand, within Shewana3_3348 at 4017.327 kb on + strand, within Shewana3_3348 at 4017.761 kb on - strand at 4017.808 kb on - strand at 4018.035 kb on + strand at 4018.035 kb on + strand at 4018.282 kb on + strand, within Shewana3_3349 at 4018.282 kb on + strand, within Shewana3_3349 at 4018.309 kb on - strand, within Shewana3_3349 at 4018.731 kb on + strand at 4018.731 kb on + strand at 4018.733 kb on + strand at 4018.901 kb on - strand at 4019.021 kb on + strand, within Shewana3_3350 at 4019.021 kb on + strand, within Shewana3_3350 at 4019.029 kb on - strand, within Shewana3_3350 at 4019.340 kb on - strand, within Shewana3_3350 at 4019.345 kb on - strand, within Shewana3_3350 at 4019.601 kb on + strand, within Shewana3_3350 at 4019.730 kb on - strand, within Shewana3_3350
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 4,017,240 - Shewana3_3348 0.63 +0.0 4,017,278 + Shewana3_3348 0.65 -1.7 4,017,278 + Shewana3_3348 0.65 -0.4 4,017,327 + Shewana3_3348 0.69 -1.5 4,017,761 - -0.0 4,017,808 - -0.3 4,018,035 + -0.6 4,018,035 + +0.3 4,018,282 + Shewana3_3349 0.34 +3.3 4,018,282 + Shewana3_3349 0.34 -0.6 4,018,309 - Shewana3_3349 0.38 +0.2 4,018,731 + +0.9 4,018,731 + -0.3 4,018,733 + -0.3 4,018,901 - -0.2 4,019,021 + Shewana3_3350 0.11 +0.3 4,019,021 + Shewana3_3350 0.11 +0.9 4,019,029 - Shewana3_3350 0.12 +1.7 4,019,340 - Shewana3_3350 0.41 +1.4 4,019,345 - Shewana3_3350 0.41 +1.5 4,019,601 + Shewana3_3350 0.65 +0.3 4,019,730 - Shewana3_3350 0.77 +1.4
Or see this region's nucleotide sequence