Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3341 and Shewana3_3342 are separated by 84 nucleotides Shewana3_3342 and Shewana3_3343 overlap by 8 nucleotides Shewana3_3343 and Shewana3_3344 are separated by 442 nucleotides
Shewana3_3341: Shewana3_3341 - hypothetical protein (RefSeq), at 4,010,243 to 4,011,640
_3341
Shewana3_3342: Shewana3_3342 - hypothetical protein (RefSeq), at 4,011,725 to 4,012,255
_3342
Shewana3_3343: Shewana3_3343 - lysine decarboxylase transcriptional regulator, CadC (RefSeq), at 4,012,248 to 4,012,991
_3343
Shewana3_3344: Shewana3_3344 - cytochrome c, putative (RefSeq), at 4,013,434 to 4,014,258
_3344
Position (kb)
4012
4013 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4011.269 kb on - strand, within Shewana3_3341 at 4011.293 kb on - strand, within Shewana3_3341 at 4011.294 kb on - strand, within Shewana3_3341 at 4011.403 kb on + strand, within Shewana3_3341 at 4011.519 kb on + strand at 4011.760 kb on - strand at 4011.776 kb on + strand at 4011.784 kb on - strand, within Shewana3_3342 at 4011.802 kb on - strand, within Shewana3_3342 at 4011.812 kb on + strand, within Shewana3_3342 at 4011.820 kb on + strand, within Shewana3_3342 at 4011.820 kb on + strand, within Shewana3_3342 at 4011.828 kb on - strand, within Shewana3_3342 at 4011.828 kb on - strand, within Shewana3_3342 at 4011.828 kb on - strand, within Shewana3_3342 at 4011.864 kb on + strand, within Shewana3_3342 at 4011.970 kb on + strand, within Shewana3_3342 at 4011.986 kb on - strand, within Shewana3_3342 at 4011.986 kb on - strand, within Shewana3_3342 at 4011.986 kb on - strand, within Shewana3_3342 at 4012.067 kb on + strand, within Shewana3_3342 at 4012.124 kb on + strand, within Shewana3_3342 at 4012.181 kb on - strand, within Shewana3_3342 at 4012.268 kb on + strand at 4012.268 kb on + strand at 4012.276 kb on - strand at 4012.276 kb on - strand at 4012.409 kb on - strand, within Shewana3_3343 at 4012.437 kb on + strand, within Shewana3_3343 at 4012.437 kb on + strand, within Shewana3_3343 at 4012.715 kb on - strand, within Shewana3_3343 at 4012.719 kb on + strand, within Shewana3_3343 at 4012.735 kb on + strand, within Shewana3_3343 at 4012.837 kb on + strand, within Shewana3_3343 at 4012.837 kb on + strand, within Shewana3_3343 at 4012.978 kb on + strand at 4012.986 kb on - strand at 4013.039 kb on - strand at 4013.466 kb on - strand at 4013.901 kb on + strand, within Shewana3_3344 at 4013.976 kb on + strand, within Shewana3_3344
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 4,011,269 - Shewana3_3341 0.73 +0.9 4,011,293 - Shewana3_3341 0.75 -2.7 4,011,294 - Shewana3_3341 0.75 -0.6 4,011,403 + Shewana3_3341 0.83 -2.1 4,011,519 + -1.2 4,011,760 - +1.6 4,011,776 + -1.3 4,011,784 - Shewana3_3342 0.11 -0.0 4,011,802 - Shewana3_3342 0.15 -1.6 4,011,812 + Shewana3_3342 0.16 -0.7 4,011,820 + Shewana3_3342 0.18 -0.9 4,011,820 + Shewana3_3342 0.18 -0.7 4,011,828 - Shewana3_3342 0.19 -2.1 4,011,828 - Shewana3_3342 0.19 -0.9 4,011,828 - Shewana3_3342 0.19 -1.3 4,011,864 + Shewana3_3342 0.26 +0.4 4,011,970 + Shewana3_3342 0.46 -0.8 4,011,986 - Shewana3_3342 0.49 -0.9 4,011,986 - Shewana3_3342 0.49 -1.3 4,011,986 - Shewana3_3342 0.49 -0.7 4,012,067 + Shewana3_3342 0.64 -3.2 4,012,124 + Shewana3_3342 0.75 +1.1 4,012,181 - Shewana3_3342 0.86 -0.9 4,012,268 + -1.6 4,012,268 + -0.6 4,012,276 - -2.1 4,012,276 - +1.4 4,012,409 - Shewana3_3343 0.22 -1.3 4,012,437 + Shewana3_3343 0.25 -0.6 4,012,437 + Shewana3_3343 0.25 -1.1 4,012,715 - Shewana3_3343 0.63 -0.7 4,012,719 + Shewana3_3343 0.63 -0.1 4,012,735 + Shewana3_3343 0.65 -0.7 4,012,837 + Shewana3_3343 0.79 +0.7 4,012,837 + Shewana3_3343 0.79 -0.4 4,012,978 + +0.9 4,012,986 - -0.6 4,013,039 - -0.6 4,013,466 - -0.8 4,013,901 + Shewana3_3344 0.57 -0.7 4,013,976 + Shewana3_3344 0.66 -0.7
Or see this region's nucleotide sequence