Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3288 and Shewana3_3289 are separated by 159 nucleotides Shewana3_3289 and Shewana3_3290 are separated by 210 nucleotides
Shewana3_3288: Shewana3_3288 - MORN repeat-containing protein (RefSeq), at 3,933,711 to 3,935,444
_3288
Shewana3_3289: Shewana3_3289 - MORN repeat-containing protein (RefSeq), at 3,935,604 to 3,937,916
_3289
Shewana3_3290: Shewana3_3290 - sodium/calcium exchanger membrane region (RefSeq), at 3,938,127 to 3,939,224
_3290
Position (kb)
3935
3936
3937
3938 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3934.840 kb on - strand, within Shewana3_3288 at 3934.907 kb on - strand, within Shewana3_3288 at 3935.132 kb on + strand, within Shewana3_3288 at 3935.814 kb on - strand at 3935.922 kb on - strand, within Shewana3_3289 at 3936.009 kb on + strand, within Shewana3_3289 at 3936.305 kb on + strand, within Shewana3_3289 at 3936.318 kb on - strand, within Shewana3_3289 at 3936.355 kb on + strand, within Shewana3_3289 at 3936.363 kb on - strand, within Shewana3_3289 at 3936.553 kb on - strand, within Shewana3_3289 at 3936.645 kb on - strand, within Shewana3_3289 at 3936.773 kb on + strand, within Shewana3_3289 at 3936.825 kb on + strand, within Shewana3_3289 at 3936.835 kb on + strand, within Shewana3_3289 at 3936.928 kb on - strand, within Shewana3_3289 at 3936.984 kb on - strand, within Shewana3_3289 at 3937.132 kb on + strand, within Shewana3_3289 at 3937.369 kb on + strand, within Shewana3_3289 at 3937.952 kb on - strand at 3938.157 kb on - strand at 3938.236 kb on - strand at 3938.268 kb on + strand, within Shewana3_3290 at 3938.269 kb on - strand, within Shewana3_3290 at 3938.350 kb on + strand, within Shewana3_3290 at 3938.579 kb on + strand, within Shewana3_3290 at 3938.584 kb on + strand, within Shewana3_3290 at 3938.592 kb on - strand, within Shewana3_3290 at 3938.592 kb on - strand, within Shewana3_3290 at 3938.667 kb on + strand, within Shewana3_3290
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 3,934,840 - Shewana3_3288 0.65 -0.5 3,934,907 - Shewana3_3288 0.69 -1.0 3,935,132 + Shewana3_3288 0.82 +0.2 3,935,814 - -0.6 3,935,922 - Shewana3_3289 0.14 +0.3 3,936,009 + Shewana3_3289 0.18 +0.1 3,936,305 + Shewana3_3289 0.30 -0.0 3,936,318 - Shewana3_3289 0.31 +0.4 3,936,355 + Shewana3_3289 0.32 +1.4 3,936,363 - Shewana3_3289 0.33 -0.6 3,936,553 - Shewana3_3289 0.41 +0.3 3,936,645 - Shewana3_3289 0.45 +1.8 3,936,773 + Shewana3_3289 0.51 -0.4 3,936,825 + Shewana3_3289 0.53 -3.0 3,936,835 + Shewana3_3289 0.53 +0.5 3,936,928 - Shewana3_3289 0.57 +1.1 3,936,984 - Shewana3_3289 0.60 -1.4 3,937,132 + Shewana3_3289 0.66 -1.3 3,937,369 + Shewana3_3289 0.76 -1.3 3,937,952 - +2.0 3,938,157 - -0.5 3,938,236 - +0.5 3,938,268 + Shewana3_3290 0.13 +0.0 3,938,269 - Shewana3_3290 0.13 -0.2 3,938,350 + Shewana3_3290 0.20 -0.4 3,938,579 + Shewana3_3290 0.41 +1.7 3,938,584 + Shewana3_3290 0.42 +0.1 3,938,592 - Shewana3_3290 0.42 +0.4 3,938,592 - Shewana3_3290 0.42 +0.6 3,938,667 + Shewana3_3290 0.49 -1.0
Or see this region's nucleotide sequence