Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3286 and Shewana3_3287 are separated by 271 nucleotides Shewana3_3287 and Shewana3_3288 are separated by 9 nucleotides
Shewana3_3286: Shewana3_3286 - dienelactone hydrolase (RefSeq), at 3,930,179 to 3,931,141
_3286
Shewana3_3287: Shewana3_3287 - hypothetical protein (RefSeq), at 3,931,413 to 3,933,701
_3287
Shewana3_3288: Shewana3_3288 - MORN repeat-containing protein (RefSeq), at 3,933,711 to 3,935,444
_3288
Position (kb)
3931
3932
3933
3934 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3930.416 kb on + strand, within Shewana3_3286 at 3930.424 kb on - strand, within Shewana3_3286 at 3930.688 kb on + strand, within Shewana3_3286 at 3930.793 kb on + strand, within Shewana3_3286 at 3930.794 kb on + strand, within Shewana3_3286 at 3930.843 kb on - strand, within Shewana3_3286 at 3930.880 kb on + strand, within Shewana3_3286 at 3930.996 kb on - strand, within Shewana3_3286 at 3931.112 kb on - strand at 3931.167 kb on + strand at 3931.172 kb on + strand at 3931.172 kb on + strand at 3931.198 kb on + strand at 3931.242 kb on - strand at 3931.715 kb on + strand, within Shewana3_3287 at 3931.758 kb on + strand, within Shewana3_3287 at 3931.820 kb on + strand, within Shewana3_3287 at 3931.941 kb on + strand, within Shewana3_3287 at 3932.071 kb on - strand, within Shewana3_3287 at 3932.682 kb on - strand, within Shewana3_3287 at 3932.851 kb on + strand, within Shewana3_3287 at 3932.940 kb on - strand, within Shewana3_3287 at 3933.028 kb on - strand, within Shewana3_3287 at 3933.252 kb on - strand, within Shewana3_3287 at 3933.271 kb on - strand, within Shewana3_3287 at 3933.397 kb on + strand, within Shewana3_3287 at 3933.403 kb on + strand, within Shewana3_3287 at 3933.436 kb on - strand, within Shewana3_3287 at 3933.466 kb on - strand, within Shewana3_3287 at 3933.522 kb on + strand at 3933.564 kb on + strand at 3933.566 kb on + strand at 3933.601 kb on + strand at 3933.622 kb on + strand at 3933.695 kb on + strand at 3933.755 kb on + strand at 3933.791 kb on - strand at 3933.791 kb on - strand at 3933.886 kb on - strand, within Shewana3_3288 at 3934.032 kb on + strand, within Shewana3_3288 at 3934.256 kb on - strand, within Shewana3_3288 at 3934.308 kb on - strand, within Shewana3_3288 at 3934.467 kb on - strand, within Shewana3_3288 at 3934.526 kb on + strand, within Shewana3_3288 at 3934.549 kb on - strand, within Shewana3_3288
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 3,930,416 + Shewana3_3286 0.25 +0.1 3,930,424 - Shewana3_3286 0.25 +0.1 3,930,688 + Shewana3_3286 0.53 -0.3 3,930,793 + Shewana3_3286 0.64 -0.0 3,930,794 + Shewana3_3286 0.64 +0.4 3,930,843 - Shewana3_3286 0.69 -0.1 3,930,880 + Shewana3_3286 0.73 -0.2 3,930,996 - Shewana3_3286 0.85 +4.5 3,931,112 - -1.4 3,931,167 + +0.5 3,931,172 + -1.1 3,931,172 + -1.8 3,931,198 + -0.1 3,931,242 - -1.7 3,931,715 + Shewana3_3287 0.13 +2.4 3,931,758 + Shewana3_3287 0.15 -0.4 3,931,820 + Shewana3_3287 0.18 -0.4 3,931,941 + Shewana3_3287 0.23 -0.2 3,932,071 - Shewana3_3287 0.29 +0.3 3,932,682 - Shewana3_3287 0.55 -1.7 3,932,851 + Shewana3_3287 0.63 -0.3 3,932,940 - Shewana3_3287 0.67 -1.8 3,933,028 - Shewana3_3287 0.71 -0.1 3,933,252 - Shewana3_3287 0.80 -0.7 3,933,271 - Shewana3_3287 0.81 +0.0 3,933,397 + Shewana3_3287 0.87 -0.1 3,933,403 + Shewana3_3287 0.87 -1.1 3,933,436 - Shewana3_3287 0.88 -3.4 3,933,466 - Shewana3_3287 0.90 -1.5 3,933,522 + -1.8 3,933,564 + -0.6 3,933,566 + -2.5 3,933,601 + -0.1 3,933,622 + -0.8 3,933,695 + -0.5 3,933,755 + -0.9 3,933,791 - +0.2 3,933,791 - +0.2 3,933,886 - Shewana3_3288 0.10 +3.0 3,934,032 + Shewana3_3288 0.19 -0.1 3,934,256 - Shewana3_3288 0.31 +0.0 3,934,308 - Shewana3_3288 0.34 +1.0 3,934,467 - Shewana3_3288 0.44 -0.8 3,934,526 + Shewana3_3288 0.47 -1.2 3,934,549 - Shewana3_3288 0.48 -1.2
Or see this region's nucleotide sequence