Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3271 and Shewana3_3272 are separated by 71 nucleotides Shewana3_3272 and Shewana3_3273 are separated by 15 nucleotides Shewana3_3273 and Shewana3_3274 are separated by 148 nucleotides Shewana3_3274 and Shewana3_3275 are separated by 28 nucleotides
Shewana3_3271: Shewana3_3271 - cell division protein ZipA (RefSeq), at 3,911,178 to 3,911,732
_3271
Shewana3_3272: Shewana3_3272 - periplasmic binding protein (RefSeq), at 3,911,804 to 3,912,628
_3272
Shewana3_3273: Shewana3_3273 - hypothetical protein (RefSeq), at 3,912,644 to 3,913,681
_3273
Shewana3_3274: Shewana3_3274 - cob(I)yrinic acid a,c-diamide adenosyltransferase (RefSeq), at 3,913,830 to 3,914,465
_3274
Shewana3_3275: Shewana3_3275 - cobyric acid synthase (RefSeq), at 3,914,494 to 3,916,119
_3275
Position (kb)
3912
3913
3914 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3911.654 kb on + strand, within Shewana3_3271 at 3911.796 kb on - strand at 3911.861 kb on - strand at 3911.949 kb on - strand, within Shewana3_3272 at 3911.973 kb on - strand, within Shewana3_3272 at 3911.973 kb on - strand, within Shewana3_3272 at 3911.975 kb on + strand, within Shewana3_3272 at 3912.093 kb on - strand, within Shewana3_3272 at 3912.129 kb on - strand, within Shewana3_3272 at 3912.129 kb on - strand, within Shewana3_3272 at 3912.134 kb on - strand, within Shewana3_3272 at 3912.229 kb on - strand, within Shewana3_3272 at 3912.676 kb on + strand at 3912.676 kb on + strand at 3913.305 kb on - strand, within Shewana3_3273 at 3913.371 kb on - strand, within Shewana3_3273 at 3913.433 kb on + strand, within Shewana3_3273 at 3913.438 kb on + strand, within Shewana3_3273 at 3913.801 kb on + strand at 3913.828 kb on + strand at 3914.076 kb on - strand, within Shewana3_3274 at 3914.153 kb on - strand, within Shewana3_3274 at 3914.206 kb on + strand, within Shewana3_3274 at 3914.426 kb on - strand at 3914.643 kb on + strand at 3914.651 kb on - strand at 3914.651 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 3,911,654 + Shewana3_3271 0.86 -0.1 3,911,796 - +0.0 3,911,861 - -0.8 3,911,949 - Shewana3_3272 0.18 -0.8 3,911,973 - Shewana3_3272 0.20 -0.8 3,911,973 - Shewana3_3272 0.20 +0.7 3,911,975 + Shewana3_3272 0.21 +2.0 3,912,093 - Shewana3_3272 0.35 +0.5 3,912,129 - Shewana3_3272 0.39 -0.7 3,912,129 - Shewana3_3272 0.39 +0.1 3,912,134 - Shewana3_3272 0.40 +0.7 3,912,229 - Shewana3_3272 0.52 -0.2 3,912,676 + -1.3 3,912,676 + +1.7 3,913,305 - Shewana3_3273 0.64 -2.1 3,913,371 - Shewana3_3273 0.70 -1.8 3,913,433 + Shewana3_3273 0.76 -0.6 3,913,438 + Shewana3_3273 0.76 -1.0 3,913,801 + -2.0 3,913,828 + -0.0 3,914,076 - Shewana3_3274 0.39 -0.5 3,914,153 - Shewana3_3274 0.51 -0.4 3,914,206 + Shewana3_3274 0.59 -0.2 3,914,426 - -0.6 3,914,643 + +0.1 3,914,651 - -0.2 3,914,651 - -0.4
Or see this region's nucleotide sequence