Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3273

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3271 and Shewana3_3272 are separated by 71 nucleotidesShewana3_3272 and Shewana3_3273 are separated by 15 nucleotidesShewana3_3273 and Shewana3_3274 are separated by 148 nucleotidesShewana3_3274 and Shewana3_3275 are separated by 28 nucleotides Shewana3_3271: Shewana3_3271 - cell division protein ZipA (RefSeq), at 3,911,178 to 3,911,732 _3271 Shewana3_3272: Shewana3_3272 - periplasmic binding protein (RefSeq), at 3,911,804 to 3,912,628 _3272 Shewana3_3273: Shewana3_3273 - hypothetical protein (RefSeq), at 3,912,644 to 3,913,681 _3273 Shewana3_3274: Shewana3_3274 - cob(I)yrinic acid a,c-diamide adenosyltransferase (RefSeq), at 3,913,830 to 3,914,465 _3274 Shewana3_3275: Shewana3_3275 - cobyric acid synthase (RefSeq), at 3,914,494 to 3,916,119 _3275 Position (kb) 3912 3913 3914Strain fitness (log2 ratio) -2 -1 0 1 2at 3911.654 kb on + strand, within Shewana3_3271at 3911.796 kb on - strandat 3911.861 kb on - strandat 3911.949 kb on - strand, within Shewana3_3272at 3911.973 kb on - strand, within Shewana3_3272at 3911.973 kb on - strand, within Shewana3_3272at 3911.975 kb on + strand, within Shewana3_3272at 3912.093 kb on - strand, within Shewana3_3272at 3912.129 kb on - strand, within Shewana3_3272at 3912.129 kb on - strand, within Shewana3_3272at 3912.134 kb on - strand, within Shewana3_3272at 3912.229 kb on - strand, within Shewana3_3272at 3912.676 kb on + strandat 3912.676 kb on + strandat 3913.305 kb on - strand, within Shewana3_3273at 3913.371 kb on - strand, within Shewana3_3273at 3913.433 kb on + strand, within Shewana3_3273at 3913.438 kb on + strand, within Shewana3_3273at 3913.801 kb on + strandat 3913.828 kb on + strandat 3914.076 kb on - strand, within Shewana3_3274at 3914.153 kb on - strand, within Shewana3_3274at 3914.206 kb on + strand, within Shewana3_3274at 3914.426 kb on - strandat 3914.643 kb on + strandat 3914.651 kb on - strandat 3914.651 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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3,911,654 + Shewana3_3271 0.86 -0.1
3,911,796 - +0.0
3,911,861 - -0.8
3,911,949 - Shewana3_3272 0.18 -0.8
3,911,973 - Shewana3_3272 0.20 -0.8
3,911,973 - Shewana3_3272 0.20 +0.7
3,911,975 + Shewana3_3272 0.21 +2.0
3,912,093 - Shewana3_3272 0.35 +0.5
3,912,129 - Shewana3_3272 0.39 -0.7
3,912,129 - Shewana3_3272 0.39 +0.1
3,912,134 - Shewana3_3272 0.40 +0.7
3,912,229 - Shewana3_3272 0.52 -0.2
3,912,676 + -1.3
3,912,676 + +1.7
3,913,305 - Shewana3_3273 0.64 -2.1
3,913,371 - Shewana3_3273 0.70 -1.8
3,913,433 + Shewana3_3273 0.76 -0.6
3,913,438 + Shewana3_3273 0.76 -1.0
3,913,801 + -2.0
3,913,828 + -0.0
3,914,076 - Shewana3_3274 0.39 -0.5
3,914,153 - Shewana3_3274 0.51 -0.4
3,914,206 + Shewana3_3274 0.59 -0.2
3,914,426 - -0.6
3,914,643 + +0.1
3,914,651 - -0.2
3,914,651 - -0.4

Or see this region's nucleotide sequence