Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3247 and Shewana3_3248 are separated by 2 nucleotides Shewana3_3248 and Shewana3_3249 are separated by 150 nucleotides Shewana3_3249 and Shewana3_3250 are separated by 19 nucleotides Shewana3_3250 and Shewana3_3251 are separated by 197 nucleotides
Shewana3_3247: Shewana3_3247 - extracellular solute-binding protein (RefSeq), at 3,890,234 to 3,891,091
_3247
Shewana3_3248: Shewana3_3248 - UspA domain-containing protein (RefSeq), at 3,891,094 to 3,891,543
_3248
Shewana3_3249: Shewana3_3249 - UspA domain-containing protein (RefSeq), at 3,891,694 to 3,892,125
_3249
Shewana3_3250: Shewana3_3250 - hypothetical protein (RefSeq), at 3,892,145 to 3,892,543
_3250
Shewana3_3251: Shewana3_3251 - aldehyde dehydrogenase (RefSeq), at 3,892,741 to 3,894,165
_3251
Position (kb)
3891
3892
3893 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3890.951 kb on - strand, within Shewana3_3247 at 3891.051 kb on - strand at 3891.068 kb on + strand at 3891.358 kb on + strand, within Shewana3_3248 at 3891.365 kb on + strand, within Shewana3_3248 at 3891.677 kb on + strand at 3891.805 kb on + strand, within Shewana3_3249 at 3891.869 kb on - strand, within Shewana3_3249 at 3891.935 kb on + strand, within Shewana3_3249 at 3892.159 kb on + strand at 3892.159 kb on + strand at 3892.182 kb on + strand at 3892.597 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 3,890,951 - Shewana3_3247 0.84 -2.7 3,891,051 - +0.8 3,891,068 + -0.5 3,891,358 + Shewana3_3248 0.59 -0.1 3,891,365 + Shewana3_3248 0.60 +0.1 3,891,677 + -1.0 3,891,805 + Shewana3_3249 0.26 +2.0 3,891,869 - Shewana3_3249 0.41 +0.6 3,891,935 + Shewana3_3249 0.56 +3.0 3,892,159 + +0.1 3,892,159 + -2.4 3,892,182 + +0.5 3,892,597 - +0.1
Or see this region's nucleotide sequence