Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3224

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3222 and Shewana3_3223 are separated by 396 nucleotidesShewana3_3223 and Shewana3_3224 are separated by 105 nucleotidesShewana3_3224 and Shewana3_3225 are separated by 86 nucleotides Shewana3_3222: Shewana3_3222 - hypothetical protein (RefSeq), at 3,864,842 to 3,865,276 _3222 Shewana3_3223: Shewana3_3223 - hypothetical protein (RefSeq), at 3,865,673 to 3,865,987 _3223 Shewana3_3224: Shewana3_3224 - lysine exporter protein LysE/YggA (RefSeq), at 3,866,093 to 3,866,707 _3224 Shewana3_3225: Shewana3_3225 - peptidase S10, serine carboxypeptidase (RefSeq), at 3,866,794 to 3,868,344 _3225 Position (kb) 3866 3867Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3865.302 kb on + strandat 3865.378 kb on + strandat 3865.562 kb on + strandat 3865.597 kb on + strandat 3865.605 kb on - strandat 3865.620 kb on - strandat 3865.635 kb on - strandat 3865.743 kb on + strand, within Shewana3_3223at 3865.982 kb on + strandat 3866.023 kb on - strandat 3866.079 kb on - strandat 3866.079 kb on - strandat 3866.266 kb on - strand, within Shewana3_3224at 3866.459 kb on + strand, within Shewana3_3224at 3866.526 kb on + strand, within Shewana3_3224at 3866.628 kb on + strand, within Shewana3_3224at 3866.662 kb on - strandat 3866.683 kb on + strandat 3866.691 kb on - strandat 3866.691 kb on - strandat 3866.738 kb on + strandat 3866.771 kb on - strandat 3866.771 kb on - strandat 3866.893 kb on + strandat 3866.901 kb on - strandat 3866.908 kb on + strandat 3866.914 kb on + strandat 3867.106 kb on - strand, within Shewana3_3225at 3867.259 kb on + strand, within Shewana3_3225at 3867.352 kb on - strand, within Shewana3_3225at 3867.352 kb on - strand, within Shewana3_3225at 3867.352 kb on - strand, within Shewana3_3225at 3867.432 kb on + strand, within Shewana3_3225at 3867.445 kb on + strand, within Shewana3_3225at 3867.447 kb on - strand, within Shewana3_3225at 3867.489 kb on - strand, within Shewana3_3225at 3867.517 kb on - strand, within Shewana3_3225

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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3,865,302 + +1.2
3,865,378 + -0.1
3,865,562 + -0.6
3,865,597 + -0.1
3,865,605 - -0.8
3,865,620 - +3.1
3,865,635 - -2.8
3,865,743 + Shewana3_3223 0.22 -0.6
3,865,982 + -1.4
3,866,023 - -1.4
3,866,079 - +0.1
3,866,079 - +0.3
3,866,266 - Shewana3_3224 0.28 +1.2
3,866,459 + Shewana3_3224 0.60 +0.2
3,866,526 + Shewana3_3224 0.70 -2.2
3,866,628 + Shewana3_3224 0.87 +1.2
3,866,662 - -0.2
3,866,683 + -0.4
3,866,691 - +0.7
3,866,691 - +0.4
3,866,738 + +2.5
3,866,771 - -0.7
3,866,771 - -0.1
3,866,893 + +2.1
3,866,901 - +0.5
3,866,908 + +2.1
3,866,914 + +0.2
3,867,106 - Shewana3_3225 0.20 -1.1
3,867,259 + Shewana3_3225 0.30 -0.3
3,867,352 - Shewana3_3225 0.36 -0.5
3,867,352 - Shewana3_3225 0.36 -0.2
3,867,352 - Shewana3_3225 0.36 +0.2
3,867,432 + Shewana3_3225 0.41 -0.8
3,867,445 + Shewana3_3225 0.42 +3.1
3,867,447 - Shewana3_3225 0.42 +0.3
3,867,489 - Shewana3_3225 0.45 -0.2
3,867,517 - Shewana3_3225 0.47 +0.6

Or see this region's nucleotide sequence