Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3200
Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.05 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,842,207 | + | -2.0 | |||
3,842,215 | - | +2.5 | |||
3,842,231 | + | -0.9 | |||
3,842,332 | + | +0.5 | |||
3,842,391 | - | -1.8 | |||
3,842,397 | - | +0.0 | |||
3,842,409 | - | -0.3 | |||
3,842,467 | - | -1.2 | |||
3,842,604 | - | +0.1 | |||
3,842,679 | + | -3.4 | |||
3,842,721 | - | +0.1 | |||
3,842,779 | + | -0.5 | |||
3,843,141 | + | Shewana3_3200 | 0.20 | -1.0 | |
3,843,191 | - | Shewana3_3200 | 0.24 | +0.1 | |
3,843,232 | + | Shewana3_3200 | 0.28 | -2.5 | |
3,843,387 | + | Shewana3_3200 | 0.43 | -1.4 | |
3,843,482 | - | Shewana3_3200 | 0.53 | -0.4 | |
3,843,948 | - | -1.3 | |||
3,843,984 | - | -0.2 | |||
3,844,124 | - | +0.2 | |||
3,844,222 | - | +1.0 | |||
3,844,687 | + | Shewana3_3201 | 0.34 | -0.6 | |
3,844,873 | - | Shewana3_3201 | 0.54 | -0.7 | |
3,844,944 | + | Shewana3_3201 | 0.61 | +1.5 | |
3,844,944 | + | Shewana3_3201 | 0.61 | -2.3 | |
3,844,952 | - | Shewana3_3201 | 0.62 | -0.1 |
Or see this region's nucleotide sequence