Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3200

Experiment: Cisplatin 0.05 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_3200 and Shewana3_3201 are separated by 385 nucleotides Shewana3_3200: Shewana3_3200 - hypothetical protein (RefSeq), at 3,842,938 to 3,843,972 _3200 Shewana3_3201: Shewana3_3201 - D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (RefSeq), at 3,844,358 to 3,845,311 _3201 Position (kb) 3842 3843 3844Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3842.207 kb on + strandat 3842.215 kb on - strandat 3842.231 kb on + strandat 3842.332 kb on + strandat 3842.391 kb on - strandat 3842.397 kb on - strandat 3842.409 kb on - strandat 3842.467 kb on - strandat 3842.604 kb on - strandat 3842.679 kb on + strandat 3842.721 kb on - strandat 3842.779 kb on + strandat 3843.141 kb on + strand, within Shewana3_3200at 3843.191 kb on - strand, within Shewana3_3200at 3843.232 kb on + strand, within Shewana3_3200at 3843.387 kb on + strand, within Shewana3_3200at 3843.482 kb on - strand, within Shewana3_3200at 3843.948 kb on - strandat 3843.984 kb on - strandat 3844.124 kb on - strandat 3844.222 kb on - strandat 3844.687 kb on + strand, within Shewana3_3201at 3844.873 kb on - strand, within Shewana3_3201at 3844.944 kb on + strand, within Shewana3_3201at 3844.944 kb on + strand, within Shewana3_3201at 3844.952 kb on - strand, within Shewana3_3201

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
remove
3,842,207 + -2.0
3,842,215 - +2.5
3,842,231 + -0.9
3,842,332 + +0.5
3,842,391 - -1.8
3,842,397 - +0.0
3,842,409 - -0.3
3,842,467 - -1.2
3,842,604 - +0.1
3,842,679 + -3.4
3,842,721 - +0.1
3,842,779 + -0.5
3,843,141 + Shewana3_3200 0.20 -1.0
3,843,191 - Shewana3_3200 0.24 +0.1
3,843,232 + Shewana3_3200 0.28 -2.5
3,843,387 + Shewana3_3200 0.43 -1.4
3,843,482 - Shewana3_3200 0.53 -0.4
3,843,948 - -1.3
3,843,984 - -0.2
3,844,124 - +0.2
3,844,222 - +1.0
3,844,687 + Shewana3_3201 0.34 -0.6
3,844,873 - Shewana3_3201 0.54 -0.7
3,844,944 + Shewana3_3201 0.61 +1.5
3,844,944 + Shewana3_3201 0.61 -2.3
3,844,952 - Shewana3_3201 0.62 -0.1

Or see this region's nucleotide sequence