Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3190

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3189 and Shewana3_3190 are separated by 183 nucleotidesShewana3_3190 and Shewana3_3191 are separated by 9 nucleotidesShewana3_3191 and Shewana3_3192 overlap by 4 nucleotides Shewana3_3189: Shewana3_3189 - sulfate ABC transporter, periplasmic sulfate-binding protein (RefSeq), at 3,827,075 to 3,828,082 _3189 Shewana3_3190: Shewana3_3190 - sulfate ABC transporter, inner membrane subunit CysT (RefSeq), at 3,828,266 to 3,829,111 _3190 Shewana3_3191: Shewana3_3191 - sulfate ABC transporter, inner membrane subunit CysW (RefSeq), at 3,829,121 to 3,829,990 _3191 Shewana3_3192: Shewana3_3192 - sulfate ABC transporter, ATPase subunit (RefSeq), at 3,829,987 to 3,831,117 _3192 Position (kb) 3828 3829 3830Strain fitness (log2 ratio) -2 -1 0 1 2at 3827.282 kb on + strand, within Shewana3_3189at 3827.282 kb on + strand, within Shewana3_3189at 3827.287 kb on + strand, within Shewana3_3189at 3827.290 kb on - strand, within Shewana3_3189at 3827.420 kb on + strand, within Shewana3_3189at 3827.564 kb on + strand, within Shewana3_3189at 3827.564 kb on + strand, within Shewana3_3189at 3827.564 kb on + strand, within Shewana3_3189at 3827.610 kb on + strand, within Shewana3_3189at 3828.004 kb on + strandat 3828.239 kb on + strandat 3828.247 kb on - strandat 3828.324 kb on + strandat 3828.324 kb on + strandat 3828.324 kb on + strandat 3828.332 kb on - strandat 3828.332 kb on - strandat 3828.603 kb on - strand, within Shewana3_3190at 3828.695 kb on + strand, within Shewana3_3190at 3828.695 kb on + strand, within Shewana3_3190at 3828.703 kb on - strand, within Shewana3_3190at 3828.802 kb on + strand, within Shewana3_3190at 3828.804 kb on + strand, within Shewana3_3190at 3828.861 kb on - strand, within Shewana3_3190at 3828.884 kb on - strand, within Shewana3_3190at 3828.886 kb on + strand, within Shewana3_3190at 3828.908 kb on - strand, within Shewana3_3190at 3828.908 kb on - strand, within Shewana3_3190at 3828.944 kb on + strand, within Shewana3_3190at 3828.952 kb on - strand, within Shewana3_3190at 3829.077 kb on - strandat 3829.311 kb on + strand, within Shewana3_3191at 3829.689 kb on + strand, within Shewana3_3191at 3829.770 kb on - strand, within Shewana3_3191at 3829.783 kb on - strand, within Shewana3_3191at 3829.852 kb on + strand, within Shewana3_3191at 3829.875 kb on + strand, within Shewana3_3191at 3829.889 kb on - strand, within Shewana3_3191at 3829.920 kb on + strandat 3829.921 kb on - strandat 3829.966 kb on - strandat 3829.983 kb on - strandat 3830.076 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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3,827,282 + Shewana3_3189 0.21 +0.9
3,827,282 + Shewana3_3189 0.21 +0.9
3,827,287 + Shewana3_3189 0.21 -0.2
3,827,290 - Shewana3_3189 0.21 -0.7
3,827,420 + Shewana3_3189 0.34 +0.9
3,827,564 + Shewana3_3189 0.49 +0.3
3,827,564 + Shewana3_3189 0.49 +0.2
3,827,564 + Shewana3_3189 0.49 -0.7
3,827,610 + Shewana3_3189 0.53 -0.6
3,828,004 + +0.7
3,828,239 + -0.7
3,828,247 - -0.8
3,828,324 + +0.4
3,828,324 + -0.9
3,828,324 + -0.0
3,828,332 - -0.4
3,828,332 - +0.6
3,828,603 - Shewana3_3190 0.40 -0.2
3,828,695 + Shewana3_3190 0.51 -0.5
3,828,695 + Shewana3_3190 0.51 +0.6
3,828,703 - Shewana3_3190 0.52 -1.1
3,828,802 + Shewana3_3190 0.63 -0.3
3,828,804 + Shewana3_3190 0.64 -0.8
3,828,861 - Shewana3_3190 0.70 -0.9
3,828,884 - Shewana3_3190 0.73 -0.1
3,828,886 + Shewana3_3190 0.73 +0.6
3,828,908 - Shewana3_3190 0.76 +1.9
3,828,908 - Shewana3_3190 0.76 +1.2
3,828,944 + Shewana3_3190 0.80 -1.4
3,828,952 - Shewana3_3190 0.81 -0.5
3,829,077 - +1.9
3,829,311 + Shewana3_3191 0.22 -0.3
3,829,689 + Shewana3_3191 0.65 -2.0
3,829,770 - Shewana3_3191 0.75 +0.7
3,829,783 - Shewana3_3191 0.76 +1.1
3,829,852 + Shewana3_3191 0.84 -1.7
3,829,875 + Shewana3_3191 0.87 -0.5
3,829,889 - Shewana3_3191 0.88 -1.0
3,829,920 + -0.1
3,829,921 - -0.6
3,829,966 - -1.3
3,829,983 - -1.4
3,830,076 - -1.4

Or see this region's nucleotide sequence