Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3174 and Shewana3_3175 are separated by 97 nucleotides Shewana3_3175 and Shewana3_3176 are separated by 14 nucleotides Shewana3_3176 and Shewana3_3177 are separated by 146 nucleotides Shewana3_3177 and Shewana3_3178 are separated by 50 nucleotides
Shewana3_3174: Shewana3_3174 - globin (RefSeq), at 3,815,059 to 3,816,252
_3174
Shewana3_3175: Shewana3_3175 - pseudouridine synthase, Rsu (RefSeq), at 3,816,350 to 3,817,075
_3175
Shewana3_3176: Shewana3_3176 - transcriptional regulator (RefSeq), at 3,817,090 to 3,817,710
_3176
Shewana3_3177: Shewana3_3177 - NADPH-dependent FMN reductase (RefSeq), at 3,817,857 to 3,818,471
_3177
Shewana3_3178: Shewana3_3178 - glyoxalase/bleomycin resistance protein/dioxygenase (RefSeq), at 3,818,522 to 3,818,938
_3178
Position (kb)
3817
3818 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3816.158 kb on + strand at 3816.247 kb on + strand at 3816.247 kb on + strand at 3816.307 kb on + strand at 3816.418 kb on + strand at 3816.420 kb on - strand at 3816.426 kb on - strand, within Shewana3_3175 at 3816.790 kb on + strand, within Shewana3_3175 at 3816.801 kb on - strand, within Shewana3_3175 at 3816.819 kb on + strand, within Shewana3_3175 at 3816.834 kb on - strand, within Shewana3_3175 at 3816.861 kb on + strand, within Shewana3_3175 at 3816.869 kb on - strand, within Shewana3_3175 at 3817.011 kb on + strand at 3817.077 kb on + strand at 3817.161 kb on - strand, within Shewana3_3176 at 3817.434 kb on - strand, within Shewana3_3176 at 3817.523 kb on - strand, within Shewana3_3176 at 3817.624 kb on + strand, within Shewana3_3176 at 3817.718 kb on + strand at 3817.891 kb on - strand at 3817.978 kb on + strand, within Shewana3_3177 at 3818.287 kb on - strand, within Shewana3_3177 at 3818.321 kb on + strand, within Shewana3_3177 at 3818.350 kb on + strand, within Shewana3_3177 at 3818.391 kb on + strand, within Shewana3_3177 at 3818.399 kb on - strand, within Shewana3_3177 at 3818.399 kb on - strand, within Shewana3_3177 at 3818.440 kb on - strand at 3818.529 kb on + strand at 3818.529 kb on + strand at 3818.529 kb on + strand at 3818.537 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 3,816,158 + -0.7 3,816,247 + -0.9 3,816,247 + +1.0 3,816,307 + -0.2 3,816,418 + +3.1 3,816,420 - +0.9 3,816,426 - Shewana3_3175 0.10 -0.6 3,816,790 + Shewana3_3175 0.61 -0.4 3,816,801 - Shewana3_3175 0.62 -0.3 3,816,819 + Shewana3_3175 0.65 -1.5 3,816,834 - Shewana3_3175 0.67 -1.0 3,816,861 + Shewana3_3175 0.70 -0.9 3,816,869 - Shewana3_3175 0.71 -0.7 3,817,011 + -0.6 3,817,077 + -0.5 3,817,161 - Shewana3_3176 0.11 -2.9 3,817,434 - Shewana3_3176 0.55 -1.4 3,817,523 - Shewana3_3176 0.70 -2.1 3,817,624 + Shewana3_3176 0.86 +0.8 3,817,718 + -1.4 3,817,891 - -2.1 3,817,978 + Shewana3_3177 0.20 -0.3 3,818,287 - Shewana3_3177 0.70 -0.2 3,818,321 + Shewana3_3177 0.75 -0.5 3,818,350 + Shewana3_3177 0.80 +0.2 3,818,391 + Shewana3_3177 0.87 +0.4 3,818,399 - Shewana3_3177 0.88 -0.1 3,818,399 - Shewana3_3177 0.88 +0.3 3,818,440 - +0.9 3,818,529 + +0.1 3,818,529 + -0.5 3,818,529 + -0.0 3,818,537 - -0.2
Or see this region's nucleotide sequence