Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3108 and Shewana3_3109 are separated by 185 nucleotides Shewana3_3109 and Shewana3_3110 are separated by 64 nucleotides Shewana3_3110 and Shewana3_3111 are separated by 339 nucleotides
Shewana3_3108: Shewana3_3108 - protein of unknown function DUF861, cupin_3 (RefSeq), at 3,728,256 to 3,728,615
_3108
Shewana3_3109: Shewana3_3109 - hypothetical protein (RefSeq), at 3,728,801 to 3,729,523
_3109
Shewana3_3110: Shewana3_3110 - N-acetylglucosamine transporter nagP (from data) , at 3,729,588 to 3,730,886
_3110
Shewana3_3111: Shewana3_3111 - transmembrane glucosamine N-acetyltransferase NagX (from data) , at 3,731,226 to 3,732,413
_3111
Position (kb)
3729
3730
3731 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3729.080 kb on - strand, within Shewana3_3109 at 3729.086 kb on - strand, within Shewana3_3109 at 3729.212 kb on + strand, within Shewana3_3109 at 3729.339 kb on + strand, within Shewana3_3109 at 3729.358 kb on - strand, within Shewana3_3109 at 3729.358 kb on - strand, within Shewana3_3109 at 3729.619 kb on + strand at 3729.619 kb on + strand at 3729.619 kb on + strand at 3729.755 kb on - strand, within Shewana3_3110 at 3729.828 kb on + strand, within Shewana3_3110 at 3729.867 kb on - strand, within Shewana3_3110 at 3729.943 kb on - strand, within Shewana3_3110 at 3730.047 kb on - strand, within Shewana3_3110 at 3730.185 kb on + strand, within Shewana3_3110 at 3730.193 kb on - strand, within Shewana3_3110 at 3730.193 kb on - strand, within Shewana3_3110 at 3730.203 kb on - strand, within Shewana3_3110 at 3730.387 kb on - strand, within Shewana3_3110 at 3730.387 kb on - strand, within Shewana3_3110 at 3730.387 kb on - strand, within Shewana3_3110 at 3730.530 kb on + strand, within Shewana3_3110 at 3730.548 kb on + strand, within Shewana3_3110 at 3730.727 kb on + strand, within Shewana3_3110 at 3731.257 kb on + strand at 3731.265 kb on - strand at 3731.282 kb on - strand at 3731.305 kb on + strand at 3731.313 kb on - strand at 3731.313 kb on - strand at 3731.362 kb on + strand, within Shewana3_3111 at 3731.533 kb on + strand, within Shewana3_3111 at 3731.555 kb on + strand, within Shewana3_3111 at 3731.585 kb on - strand, within Shewana3_3111 at 3731.629 kb on - strand, within Shewana3_3111 at 3731.629 kb on - strand, within Shewana3_3111 at 3731.688 kb on + strand, within Shewana3_3111 at 3731.772 kb on + strand, within Shewana3_3111 at 3731.782 kb on + strand, within Shewana3_3111 at 3731.841 kb on + strand, within Shewana3_3111 at 3731.841 kb on + strand, within Shewana3_3111
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 3,729,080 - Shewana3_3109 0.39 -0.5 3,729,086 - Shewana3_3109 0.39 +0.2 3,729,212 + Shewana3_3109 0.57 +0.6 3,729,339 + Shewana3_3109 0.74 +1.7 3,729,358 - Shewana3_3109 0.77 +0.6 3,729,358 - Shewana3_3109 0.77 +0.5 3,729,619 + +0.6 3,729,619 + -1.7 3,729,619 + -0.7 3,729,755 - Shewana3_3110 0.13 +0.6 3,729,828 + Shewana3_3110 0.18 -1.7 3,729,867 - Shewana3_3110 0.21 +0.4 3,729,943 - Shewana3_3110 0.27 +0.4 3,730,047 - Shewana3_3110 0.35 +1.8 3,730,185 + Shewana3_3110 0.46 -2.8 3,730,193 - Shewana3_3110 0.47 +0.1 3,730,193 - Shewana3_3110 0.47 -0.5 3,730,203 - Shewana3_3110 0.47 +0.7 3,730,387 - Shewana3_3110 0.62 +0.5 3,730,387 - Shewana3_3110 0.62 -0.1 3,730,387 - Shewana3_3110 0.62 -0.2 3,730,530 + Shewana3_3110 0.73 +0.1 3,730,548 + Shewana3_3110 0.74 -0.9 3,730,727 + Shewana3_3110 0.88 -0.8 3,731,257 + -1.0 3,731,265 - +1.0 3,731,282 - +0.0 3,731,305 + +0.1 3,731,313 - +0.0 3,731,313 - -0.6 3,731,362 + Shewana3_3111 0.11 -0.9 3,731,533 + Shewana3_3111 0.26 +0.3 3,731,555 + Shewana3_3111 0.28 +1.2 3,731,585 - Shewana3_3111 0.30 -0.0 3,731,629 - Shewana3_3111 0.34 -0.3 3,731,629 - Shewana3_3111 0.34 -0.2 3,731,688 + Shewana3_3111 0.39 -0.6 3,731,772 + Shewana3_3111 0.46 -0.7 3,731,782 + Shewana3_3111 0.47 -3.0 3,731,841 + Shewana3_3111 0.52 +1.2 3,731,841 + Shewana3_3111 0.52 +0.3
Or see this region's nucleotide sequence