Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3104

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3103 and Shewana3_3104 are separated by 145 nucleotidesShewana3_3104 and Shewana3_3105 are separated by 165 nucleotides Shewana3_3103: Shewana3_3103 - rhodanese domain-containing protein (RefSeq), at 3,722,010 to 3,722,867 _3103 Shewana3_3104: Shewana3_3104 - rare lipoprotein A (RefSeq), at 3,723,013 to 3,723,408 _3104 Shewana3_3105: Shewana3_3105 - aldehyde dehydrogenase (acceptor) (RefSeq), at 3,723,574 to 3,725,070 _3105 Position (kb) 3723 3724Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8at 3722.274 kb on - strand, within Shewana3_3103at 3722.284 kb on - strand, within Shewana3_3103at 3722.484 kb on + strand, within Shewana3_3103at 3722.492 kb on - strand, within Shewana3_3103at 3722.644 kb on + strand, within Shewana3_3103at 3722.662 kb on - strand, within Shewana3_3103at 3722.747 kb on + strand, within Shewana3_3103at 3722.786 kb on - strandat 3722.830 kb on + strandat 3722.848 kb on - strandat 3722.949 kb on + strandat 3723.072 kb on + strand, within Shewana3_3104at 3723.145 kb on - strand, within Shewana3_3104at 3723.145 kb on - strand, within Shewana3_3104at 3723.473 kb on + strandat 3723.491 kb on - strandat 3723.772 kb on - strand, within Shewana3_3105at 3723.854 kb on + strand, within Shewana3_3105at 3724.173 kb on - strand, within Shewana3_3105at 3724.240 kb on - strand, within Shewana3_3105at 3724.255 kb on + strand, within Shewana3_3105at 3724.273 kb on - strand, within Shewana3_3105

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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3,722,274 - Shewana3_3103 0.31 +0.4
3,722,284 - Shewana3_3103 0.32 +7.9
3,722,484 + Shewana3_3103 0.55 +1.0
3,722,492 - Shewana3_3103 0.56 +0.4
3,722,644 + Shewana3_3103 0.74 -0.6
3,722,662 - Shewana3_3103 0.76 -0.3
3,722,747 + Shewana3_3103 0.86 -0.4
3,722,786 - +0.6
3,722,830 + -1.6
3,722,848 - +0.3
3,722,949 + +1.2
3,723,072 + Shewana3_3104 0.15 -0.5
3,723,145 - Shewana3_3104 0.33 -0.7
3,723,145 - Shewana3_3104 0.33 -0.7
3,723,473 + -0.1
3,723,491 - -1.1
3,723,772 - Shewana3_3105 0.13 +0.7
3,723,854 + Shewana3_3105 0.19 -1.0
3,724,173 - Shewana3_3105 0.40 -0.4
3,724,240 - Shewana3_3105 0.44 +0.1
3,724,255 + Shewana3_3105 0.45 -2.3
3,724,273 - Shewana3_3105 0.47 +0.3

Or see this region's nucleotide sequence