Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3091
Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.05 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,706,641 | - | Shewana3_3090 | 0.16 | -0.8 | |
3,706,774 | - | Shewana3_3090 | 0.29 | +1.0 | |
3,706,860 | - | Shewana3_3090 | 0.37 | +1.0 | |
3,707,183 | - | Shewana3_3090 | 0.68 | -0.3 | |
3,707,254 | - | Shewana3_3090 | 0.74 | -0.7 | |
3,707,254 | - | Shewana3_3090 | 0.74 | -2.4 | |
3,707,284 | - | Shewana3_3090 | 0.77 | +0.2 | |
3,707,669 | - | +0.7 | |||
3,707,802 | - | Shewana3_3091 | 0.18 | +0.4 | |
3,707,937 | - | Shewana3_3091 | 0.28 | -0.1 | |
3,708,221 | + | Shewana3_3091 | 0.50 | +1.6 | |
3,708,231 | + | Shewana3_3091 | 0.51 | +1.4 | |
3,708,474 | + | Shewana3_3091 | 0.70 | -1.0 | |
3,708,687 | + | Shewana3_3091 | 0.87 | -0.1 | |
3,708,687 | + | Shewana3_3091 | 0.87 | -1.2 | |
3,708,695 | - | Shewana3_3091 | 0.88 | +0.2 | |
3,708,695 | - | Shewana3_3091 | 0.88 | -0.3 | |
3,708,695 | - | Shewana3_3091 | 0.88 | -0.4 | |
3,708,695 | - | Shewana3_3091 | 0.88 | +0.3 | |
3,708,780 | + | -0.6 | |||
3,708,859 | - | -1.3 | |||
3,709,088 | - | +0.8 | |||
3,709,217 | - | Shewana3_3092 | 0.18 | +0.1 | |
3,709,461 | - | Shewana3_3092 | 0.35 | -0.0 | |
3,709,473 | + | Shewana3_3092 | 0.36 | -1.4 | |
3,709,510 | + | Shewana3_3092 | 0.38 | -1.3 | |
3,709,787 | + | Shewana3_3092 | 0.57 | -0.4 | |
3,709,833 | - | Shewana3_3092 | 0.61 | -0.1 |
Or see this region's nucleotide sequence