Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3091

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3090 and Shewana3_3091 are separated by 52 nucleotidesShewana3_3091 and Shewana3_3092 are separated by 102 nucleotides Shewana3_3090: Shewana3_3090 - luciferase family protein (RefSeq), at 3,706,474 to 3,707,523 _3090 Shewana3_3091: Shewana3_3091 - 4-aminobutyrate aminotransferase (RefSeq), at 3,707,576 to 3,708,853 _3091 Shewana3_3092: Shewana3_3092 - succinate semialdehyde dehydrogenase (RefSeq), at 3,708,956 to 3,710,404 _3092 Position (kb) 3707 3708 3709Strain fitness (log2 ratio) -2 -1 0 1at 3706.641 kb on - strand, within Shewana3_3090at 3706.774 kb on - strand, within Shewana3_3090at 3706.860 kb on - strand, within Shewana3_3090at 3707.183 kb on - strand, within Shewana3_3090at 3707.254 kb on - strand, within Shewana3_3090at 3707.254 kb on - strand, within Shewana3_3090at 3707.284 kb on - strand, within Shewana3_3090at 3707.669 kb on - strandat 3707.802 kb on - strand, within Shewana3_3091at 3707.937 kb on - strand, within Shewana3_3091at 3708.221 kb on + strand, within Shewana3_3091at 3708.231 kb on + strand, within Shewana3_3091at 3708.474 kb on + strand, within Shewana3_3091at 3708.687 kb on + strand, within Shewana3_3091at 3708.687 kb on + strand, within Shewana3_3091at 3708.695 kb on - strand, within Shewana3_3091at 3708.695 kb on - strand, within Shewana3_3091at 3708.695 kb on - strand, within Shewana3_3091at 3708.695 kb on - strand, within Shewana3_3091at 3708.780 kb on + strandat 3708.859 kb on - strandat 3709.088 kb on - strandat 3709.217 kb on - strand, within Shewana3_3092at 3709.461 kb on - strand, within Shewana3_3092at 3709.473 kb on + strand, within Shewana3_3092at 3709.510 kb on + strand, within Shewana3_3092at 3709.787 kb on + strand, within Shewana3_3092at 3709.833 kb on - strand, within Shewana3_3092

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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3,706,641 - Shewana3_3090 0.16 -0.8
3,706,774 - Shewana3_3090 0.29 +1.0
3,706,860 - Shewana3_3090 0.37 +1.0
3,707,183 - Shewana3_3090 0.68 -0.3
3,707,254 - Shewana3_3090 0.74 -0.7
3,707,254 - Shewana3_3090 0.74 -2.4
3,707,284 - Shewana3_3090 0.77 +0.2
3,707,669 - +0.7
3,707,802 - Shewana3_3091 0.18 +0.4
3,707,937 - Shewana3_3091 0.28 -0.1
3,708,221 + Shewana3_3091 0.50 +1.6
3,708,231 + Shewana3_3091 0.51 +1.4
3,708,474 + Shewana3_3091 0.70 -1.0
3,708,687 + Shewana3_3091 0.87 -0.1
3,708,687 + Shewana3_3091 0.87 -1.2
3,708,695 - Shewana3_3091 0.88 +0.2
3,708,695 - Shewana3_3091 0.88 -0.3
3,708,695 - Shewana3_3091 0.88 -0.4
3,708,695 - Shewana3_3091 0.88 +0.3
3,708,780 + -0.6
3,708,859 - -1.3
3,709,088 - +0.8
3,709,217 - Shewana3_3092 0.18 +0.1
3,709,461 - Shewana3_3092 0.35 -0.0
3,709,473 + Shewana3_3092 0.36 -1.4
3,709,510 + Shewana3_3092 0.38 -1.3
3,709,787 + Shewana3_3092 0.57 -0.4
3,709,833 - Shewana3_3092 0.61 -0.1

Or see this region's nucleotide sequence