Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3056 and Shewana3_3057 are separated by 122 nucleotides Shewana3_3057 and Shewana3_3058 are separated by 158 nucleotides Shewana3_3058 and Shewana3_3059 are separated by 127 nucleotides
Shewana3_3056: Shewana3_3056 - hypothetical protein (RefSeq), at 3,663,115 to 3,663,606
_3056
Shewana3_3057: Shewana3_3057 - hypothetical protein (RefSeq), at 3,663,729 to 3,664,157
_3057
Shewana3_3058: Shewana3_3058 - tyrosyl-tRNA synthetase (RefSeq), at 3,664,316 to 3,665,512
_3058
Shewana3_3059: Shewana3_3059 - peptidase M23B (RefSeq), at 3,665,640 to 3,667,040
_3059
Position (kb)
3664
3665
3666 Strain fitness (log2 ratio)
-2
-1
0
1 at 3663.444 kb on + strand, within Shewana3_3056 at 3663.500 kb on + strand, within Shewana3_3056 at 3663.515 kb on + strand, within Shewana3_3056 at 3663.589 kb on - strand at 3663.769 kb on + strand at 3663.931 kb on + strand, within Shewana3_3057 at 3664.052 kb on - strand, within Shewana3_3057 at 3664.303 kb on + strand at 3664.314 kb on + strand at 3665.793 kb on - strand, within Shewana3_3059 at 3665.800 kb on - strand, within Shewana3_3059 at 3665.800 kb on - strand, within Shewana3_3059 at 3665.822 kb on - strand, within Shewana3_3059 at 3665.822 kb on - strand, within Shewana3_3059 at 3665.948 kb on - strand, within Shewana3_3059 at 3666.027 kb on - strand, within Shewana3_3059 at 3666.059 kb on + strand, within Shewana3_3059 at 3666.176 kb on - strand, within Shewana3_3059 at 3666.254 kb on - strand, within Shewana3_3059 at 3666.324 kb on - strand, within Shewana3_3059 at 3666.326 kb on + strand, within Shewana3_3059 at 3666.378 kb on + strand, within Shewana3_3059
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 3,663,444 + Shewana3_3056 0.67 -1.8 3,663,500 + Shewana3_3056 0.78 +1.1 3,663,515 + Shewana3_3056 0.81 -0.8 3,663,589 - -1.3 3,663,769 + -0.5 3,663,931 + Shewana3_3057 0.47 -0.4 3,664,052 - Shewana3_3057 0.75 +1.2 3,664,303 + -0.1 3,664,314 + +1.2 3,665,793 - Shewana3_3059 0.11 +0.4 3,665,800 - Shewana3_3059 0.11 -0.9 3,665,800 - Shewana3_3059 0.11 -1.5 3,665,822 - Shewana3_3059 0.13 -1.9 3,665,822 - Shewana3_3059 0.13 -0.5 3,665,948 - Shewana3_3059 0.22 -2.5 3,666,027 - Shewana3_3059 0.28 -0.4 3,666,059 + Shewana3_3059 0.30 -2.0 3,666,176 - Shewana3_3059 0.38 -0.1 3,666,254 - Shewana3_3059 0.44 +0.1 3,666,324 - Shewana3_3059 0.49 +0.2 3,666,326 + Shewana3_3059 0.49 +0.0 3,666,378 + Shewana3_3059 0.53 -0.2
Or see this region's nucleotide sequence