Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3043 and Shewana3_3044 are separated by 691 nucleotides Shewana3_3044 and Shewana3_3045 are separated by 183 nucleotides
Shewana3_3043: Shewana3_3043 - dinucleoside polyphosphate hydrolase (RefSeq), at 3,647,913 to 3,648,437
_3043
Shewana3_3044: Shewana3_3044 - DNA mismatch repair protein (RefSeq), at 3,649,129 to 3,649,800
_3044
Shewana3_3045: Shewana3_3045 - adenylate cyclase-related protein (RefSeq), at 3,649,984 to 3,650,991
_3045
Position (kb)
3649
3650 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3648.332 kb on - strand, within Shewana3_3043 at 3648.367 kb on - strand, within Shewana3_3043 at 3648.441 kb on + strand at 3648.818 kb on - strand at 3649.051 kb on + strand at 3649.059 kb on - strand at 3649.064 kb on - strand at 3649.167 kb on + strand at 3649.219 kb on + strand, within Shewana3_3044 at 3649.244 kb on - strand, within Shewana3_3044 at 3649.348 kb on - strand, within Shewana3_3044 at 3649.471 kb on + strand, within Shewana3_3044 at 3649.529 kb on - strand, within Shewana3_3044 at 3649.572 kb on - strand, within Shewana3_3044 at 3649.657 kb on - strand, within Shewana3_3044 at 3649.676 kb on - strand, within Shewana3_3044 at 3649.982 kb on - strand at 3650.223 kb on + strand, within Shewana3_3045 at 3650.344 kb on + strand, within Shewana3_3045 at 3650.345 kb on + strand, within Shewana3_3045 at 3650.441 kb on + strand, within Shewana3_3045 at 3650.761 kb on + strand, within Shewana3_3045
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 3,648,332 - Shewana3_3043 0.80 +0.0 3,648,367 - Shewana3_3043 0.86 +0.7 3,648,441 + -0.2 3,648,818 - +0.0 3,649,051 + -2.4 3,649,059 - -1.7 3,649,064 - -1.0 3,649,167 + +0.2 3,649,219 + Shewana3_3044 0.13 +0.4 3,649,244 - Shewana3_3044 0.17 +0.3 3,649,348 - Shewana3_3044 0.33 +0.3 3,649,471 + Shewana3_3044 0.51 +0.5 3,649,529 - Shewana3_3044 0.60 -0.1 3,649,572 - Shewana3_3044 0.66 -0.9 3,649,657 - Shewana3_3044 0.79 +0.9 3,649,676 - Shewana3_3044 0.81 +2.2 3,649,982 - +1.6 3,650,223 + Shewana3_3045 0.24 +1.2 3,650,344 + Shewana3_3045 0.36 +0.2 3,650,345 + Shewana3_3045 0.36 +1.6 3,650,441 + Shewana3_3045 0.45 +1.6 3,650,761 + Shewana3_3045 0.77 -0.2
Or see this region's nucleotide sequence