Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3019 and Shewana3_3020 are separated by 101 nucleotides Shewana3_3020 and Shewana3_3021 are separated by 65 nucleotides Shewana3_3021 and acpS are separated by 170 nucleotides
Shewana3_3019: Shewana3_3019 - cytochrome c assembly protein (RefSeq), at 3,625,517 to 3,626,305
_3019
Shewana3_3020: Shewana3_3020 - hypothetical protein (RefSeq), at 3,626,407 to 3,627,678
_3020
Shewana3_3021: Shewana3_3021 - hypothetical protein (RefSeq), at 3,627,744 to 3,628,280
_3021
Shewana3_3022: acpS - 4'-phosphopantetheinyl transferase (RefSeq), at 3,628,451 to 3,628,834
acpS
Position (kb)
3626
3627
3628 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3625.486 kb on + strand at 3625.585 kb on + strand at 3625.796 kb on + strand, within Shewana3_3019 at 3625.818 kb on + strand, within Shewana3_3019 at 3625.892 kb on + strand, within Shewana3_3019 at 3625.902 kb on + strand at 3625.932 kb on - strand, within Shewana3_3019 at 3626.191 kb on + strand, within Shewana3_3019 at 3626.191 kb on + strand, within Shewana3_3019 at 3626.232 kb on - strand at 3626.249 kb on + strand at 3626.424 kb on - strand at 3626.501 kb on + strand at 3626.515 kb on + strand at 3626.838 kb on - strand, within Shewana3_3020 at 3626.900 kb on + strand, within Shewana3_3020 at 3626.940 kb on - strand, within Shewana3_3020 at 3627.540 kb on - strand, within Shewana3_3020 at 3627.813 kb on - strand, within Shewana3_3021 at 3628.073 kb on - strand, within Shewana3_3021 at 3628.544 kb on - strand, within acpS at 3628.589 kb on - strand, within acpS at 3628.621 kb on - strand, within acpS at 3628.646 kb on + strand, within acpS
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 3,625,486 + -0.0 3,625,585 + -2.1 3,625,796 + Shewana3_3019 0.35 +0.9 3,625,818 + Shewana3_3019 0.38 +0.2 3,625,892 + Shewana3_3019 0.48 +0.6 3,625,902 + +3.8 3,625,932 - Shewana3_3019 0.53 -1.2 3,626,191 + Shewana3_3019 0.85 +0.9 3,626,191 + Shewana3_3019 0.85 +3.6 3,626,232 - -2.4 3,626,249 + +0.8 3,626,424 - -2.3 3,626,501 + -1.1 3,626,515 + +0.5 3,626,838 - Shewana3_3020 0.34 -1.1 3,626,900 + Shewana3_3020 0.39 -1.4 3,626,940 - Shewana3_3020 0.42 -0.4 3,627,540 - Shewana3_3020 0.89 +1.2 3,627,813 - Shewana3_3021 0.13 +1.1 3,628,073 - Shewana3_3021 0.61 -1.4 3,628,544 - acpS Shewana3_3022 0.24 +1.1 3,628,589 - acpS Shewana3_3022 0.36 +2.5 3,628,621 - acpS Shewana3_3022 0.44 +0.9 3,628,646 + acpS Shewana3_3022 0.51 +1.7
Or see this region's nucleotide sequence