Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3000 and Shewana3_3001 overlap by 4 nucleotides Shewana3_3001 and Shewana3_3002 are separated by 37 nucleotides Shewana3_3002 and Shewana3_3003 are separated by 39 nucleotides Shewana3_3003 and Shewana3_3004 are separated by 106 nucleotides
Shewana3_3000: Shewana3_3000 - GCN5-related N-acetyltransferase (RefSeq), at 3,605,960 to 3,606,454
_3000
Shewana3_3001: Shewana3_3001 - hypothetical protein (RefSeq), at 3,606,451 to 3,606,804
_3001
Shewana3_3002: Shewana3_3002 - hypothetical protein (RefSeq), at 3,606,842 to 3,607,099
_3002
Shewana3_3003: Shewana3_3003 - RDD domain-containing protein (RefSeq), at 3,607,139 to 3,607,648
_3003
Shewana3_3004: Shewana3_3004 - permease YjgP/YjgQ family protein (RefSeq), at 3,607,755 to 3,608,813
_3004
Position (kb)
3606
3607
3608 Strain fitness (log2 ratio)
-2
-1
0
1 at 3605.987 kb on - strand at 3606.139 kb on + strand, within Shewana3_3000 at 3606.147 kb on - strand, within Shewana3_3000 at 3606.147 kb on - strand, within Shewana3_3000 at 3606.167 kb on + strand, within Shewana3_3000 at 3606.204 kb on + strand, within Shewana3_3000 at 3606.310 kb on - strand, within Shewana3_3000 at 3606.316 kb on + strand, within Shewana3_3000 at 3606.509 kb on + strand, within Shewana3_3001 at 3606.956 kb on + strand, within Shewana3_3002 at 3607.094 kb on + strand at 3607.211 kb on - strand, within Shewana3_3003 at 3607.229 kb on + strand, within Shewana3_3003 at 3607.237 kb on - strand, within Shewana3_3003 at 3607.286 kb on + strand, within Shewana3_3003 at 3607.425 kb on + strand, within Shewana3_3003 at 3607.484 kb on - strand, within Shewana3_3003 at 3607.577 kb on + strand, within Shewana3_3003
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 3,605,987 - +0.1 3,606,139 + Shewana3_3000 0.36 +1.0 3,606,147 - Shewana3_3000 0.38 -0.6 3,606,147 - Shewana3_3000 0.38 -0.1 3,606,167 + Shewana3_3000 0.42 -2.3 3,606,204 + Shewana3_3000 0.49 +1.7 3,606,310 - Shewana3_3000 0.71 -0.8 3,606,316 + Shewana3_3000 0.72 +1.7 3,606,509 + Shewana3_3001 0.16 +0.7 3,606,956 + Shewana3_3002 0.44 -2.2 3,607,094 + +0.7 3,607,211 - Shewana3_3003 0.14 +0.4 3,607,229 + Shewana3_3003 0.18 +0.7 3,607,237 - Shewana3_3003 0.19 +1.2 3,607,286 + Shewana3_3003 0.29 +0.4 3,607,425 + Shewana3_3003 0.56 +0.7 3,607,484 - Shewana3_3003 0.68 -1.3 3,607,577 + Shewana3_3003 0.86 -0.8
Or see this region's nucleotide sequence