Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2988 and Shewana3_2989 are separated by 80 nucleotides Shewana3_2989 and Shewana3_2990 are separated by 312 nucleotides
Shewana3_2988: Shewana3_2988 - DEAD/DEAH box helicase domain-containing protein (RefSeq), at 3,593,167 to 3,594,468
_2988
Shewana3_2989: Shewana3_2989 - hypothetical protein (RefSeq), at 3,594,549 to 3,595,844
_2989
Shewana3_2990: Shewana3_2990 - hypothetical protein (RefSeq), at 3,596,157 to 3,597,044
_2990
Position (kb)
3594
3595
3596 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3593.652 kb on - strand, within Shewana3_2988 at 3593.897 kb on + strand, within Shewana3_2988 at 3593.935 kb on + strand, within Shewana3_2988 at 3594.428 kb on + strand at 3594.447 kb on - strand at 3594.518 kb on + strand at 3594.708 kb on - strand, within Shewana3_2989 at 3594.730 kb on - strand, within Shewana3_2989 at 3595.063 kb on - strand, within Shewana3_2989 at 3595.105 kb on - strand, within Shewana3_2989 at 3595.150 kb on - strand, within Shewana3_2989 at 3595.150 kb on - strand, within Shewana3_2989 at 3595.195 kb on - strand, within Shewana3_2989 at 3595.233 kb on - strand, within Shewana3_2989 at 3595.249 kb on + strand, within Shewana3_2989 at 3595.415 kb on - strand, within Shewana3_2989 at 3595.475 kb on - strand, within Shewana3_2989 at 3595.591 kb on - strand, within Shewana3_2989 at 3595.591 kb on - strand, within Shewana3_2989 at 3595.644 kb on - strand, within Shewana3_2989 at 3595.644 kb on - strand, within Shewana3_2989 at 3596.060 kb on + strand at 3596.073 kb on + strand at 3596.163 kb on - strand at 3596.299 kb on - strand, within Shewana3_2990 at 3596.454 kb on - strand, within Shewana3_2990 at 3596.571 kb on + strand, within Shewana3_2990 at 3596.837 kb on + strand, within Shewana3_2990 at 3596.837 kb on + strand, within Shewana3_2990 at 3596.837 kb on + strand, within Shewana3_2990
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 3,593,652 - Shewana3_2988 0.37 -1.9 3,593,897 + Shewana3_2988 0.56 +0.6 3,593,935 + Shewana3_2988 0.59 +0.0 3,594,428 + -0.6 3,594,447 - -0.6 3,594,518 + +1.3 3,594,708 - Shewana3_2989 0.12 -0.4 3,594,730 - Shewana3_2989 0.14 -1.4 3,595,063 - Shewana3_2989 0.40 -1.3 3,595,105 - Shewana3_2989 0.43 +0.4 3,595,150 - Shewana3_2989 0.46 -0.9 3,595,150 - Shewana3_2989 0.46 -0.7 3,595,195 - Shewana3_2989 0.50 +0.6 3,595,233 - Shewana3_2989 0.53 -0.5 3,595,249 + Shewana3_2989 0.54 -2.3 3,595,415 - Shewana3_2989 0.67 +0.7 3,595,475 - Shewana3_2989 0.71 +0.3 3,595,591 - Shewana3_2989 0.80 -0.4 3,595,591 - Shewana3_2989 0.80 -0.4 3,595,644 - Shewana3_2989 0.84 -0.2 3,595,644 - Shewana3_2989 0.84 +0.4 3,596,060 + +0.9 3,596,073 + +2.3 3,596,163 - +0.9 3,596,299 - Shewana3_2990 0.16 +2.6 3,596,454 - Shewana3_2990 0.33 -0.2 3,596,571 + Shewana3_2990 0.47 +3.3 3,596,837 + Shewana3_2990 0.77 +0.9 3,596,837 + Shewana3_2990 0.77 +1.7 3,596,837 + Shewana3_2990 0.77 +2.9
Or see this region's nucleotide sequence