Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2979

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2978 and Shewana3_2979 overlap by 23 nucleotidesShewana3_2979 and Shewana3_2980 are separated by 8 nucleotidesShewana3_2980 and Shewana3_2981 are separated by 251 nucleotides Shewana3_2978: Shewana3_2978 - hypothetical protein (RefSeq), at 3,579,205 to 3,580,449 _2978 Shewana3_2979: Shewana3_2979 - hypothetical protein (RefSeq), at 3,580,427 to 3,580,945 _2979 Shewana3_2980: Shewana3_2980 - TetR family transcriptional regulator (RefSeq), at 3,580,954 to 3,581,562 _2980 Shewana3_2981: Shewana3_2981 - HPP family protein (RefSeq), at 3,581,814 to 3,582,293 _2981 Position (kb) 3580 3581Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3579.437 kb on - strand, within Shewana3_2978at 3579.583 kb on - strand, within Shewana3_2978at 3579.613 kb on - strand, within Shewana3_2978at 3579.635 kb on + strand, within Shewana3_2978at 3579.635 kb on + strand, within Shewana3_2978at 3579.635 kb on + strand, within Shewana3_2978at 3579.681 kb on - strand, within Shewana3_2978at 3579.807 kb on - strand, within Shewana3_2978at 3579.871 kb on + strand, within Shewana3_2978at 3579.897 kb on - strand, within Shewana3_2978at 3579.926 kb on + strand, within Shewana3_2978at 3579.977 kb on + strand, within Shewana3_2978at 3579.991 kb on + strand, within Shewana3_2978at 3579.999 kb on - strand, within Shewana3_2978at 3580.024 kb on + strand, within Shewana3_2978at 3580.126 kb on + strand, within Shewana3_2978at 3580.161 kb on - strand, within Shewana3_2978at 3580.161 kb on - strand, within Shewana3_2978at 3580.163 kb on - strand, within Shewana3_2978at 3580.163 kb on - strand, within Shewana3_2978at 3580.229 kb on + strand, within Shewana3_2978at 3580.304 kb on - strand, within Shewana3_2978at 3580.327 kb on + strandat 3580.351 kb on - strandat 3580.454 kb on - strandat 3580.564 kb on + strand, within Shewana3_2979at 3580.591 kb on - strand, within Shewana3_2979at 3580.867 kb on + strand, within Shewana3_2979at 3580.873 kb on - strand, within Shewana3_2979at 3580.888 kb on - strand, within Shewana3_2979at 3580.890 kb on + strand, within Shewana3_2979at 3580.890 kb on + strand, within Shewana3_2979at 3580.898 kb on - strandat 3580.903 kb on + strandat 3580.903 kb on + strandat 3580.989 kb on + strandat 3581.104 kb on + strand, within Shewana3_2980at 3581.316 kb on - strand, within Shewana3_2980at 3581.326 kb on - strand, within Shewana3_2980at 3581.370 kb on - strand, within Shewana3_2980at 3581.560 kb on + strandat 3581.719 kb on + strandat 3581.727 kb on - strandat 3581.732 kb on - strandat 3581.734 kb on + strandat 3581.734 kb on + strandat 3581.806 kb on - strandat 3581.901 kb on + strand, within Shewana3_2981at 3581.919 kb on - strand, within Shewana3_2981

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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3,579,437 - Shewana3_2978 0.19 +0.3
3,579,583 - Shewana3_2978 0.30 -2.3
3,579,613 - Shewana3_2978 0.33 -2.0
3,579,635 + Shewana3_2978 0.35 -1.1
3,579,635 + Shewana3_2978 0.35 -2.8
3,579,635 + Shewana3_2978 0.35 -1.7
3,579,681 - Shewana3_2978 0.38 -0.9
3,579,807 - Shewana3_2978 0.48 -1.2
3,579,871 + Shewana3_2978 0.53 -0.8
3,579,897 - Shewana3_2978 0.56 -0.3
3,579,926 + Shewana3_2978 0.58 -1.2
3,579,977 + Shewana3_2978 0.62 +1.3
3,579,991 + Shewana3_2978 0.63 +2.3
3,579,999 - Shewana3_2978 0.64 -1.7
3,580,024 + Shewana3_2978 0.66 -1.2
3,580,126 + Shewana3_2978 0.74 -1.8
3,580,161 - Shewana3_2978 0.77 +0.1
3,580,161 - Shewana3_2978 0.77 -0.4
3,580,163 - Shewana3_2978 0.77 +1.1
3,580,163 - Shewana3_2978 0.77 -1.6
3,580,229 + Shewana3_2978 0.82 -1.6
3,580,304 - Shewana3_2978 0.88 -0.1
3,580,327 + +2.3
3,580,351 - -0.2
3,580,454 - +0.1
3,580,564 + Shewana3_2979 0.26 -2.0
3,580,591 - Shewana3_2979 0.32 -2.8
3,580,867 + Shewana3_2979 0.85 +3.3
3,580,873 - Shewana3_2979 0.86 +1.7
3,580,888 - Shewana3_2979 0.89 -0.9
3,580,890 + Shewana3_2979 0.89 -2.0
3,580,890 + Shewana3_2979 0.89 +1.3
3,580,898 - -2.0
3,580,903 + +1.0
3,580,903 + +1.7
3,580,989 + +4.3
3,581,104 + Shewana3_2980 0.25 -0.5
3,581,316 - Shewana3_2980 0.59 +0.5
3,581,326 - Shewana3_2980 0.61 +0.2
3,581,370 - Shewana3_2980 0.68 +0.2
3,581,560 + +0.6
3,581,719 + -2.0
3,581,727 - -0.2
3,581,732 - -0.3
3,581,734 + -2.7
3,581,734 + +0.4
3,581,806 - +0.3
3,581,901 + Shewana3_2981 0.18 +0.7
3,581,919 - Shewana3_2981 0.22 -1.0

Or see this region's nucleotide sequence