Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2959

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2957 and Shewana3_2958 are separated by 44 nucleotidesShewana3_2958 and Shewana3_2959 overlap by 1 nucleotidesShewana3_2959 and Shewana3_2960 are separated by 20 nucleotides Shewana3_2957: Shewana3_2957 - HNH endonuclease (RefSeq), at 3,550,768 to 3,551,529 _2957 Shewana3_2958: Shewana3_2958 - hypothetical protein (RefSeq), at 3,551,574 to 3,552,383 _2958 Shewana3_2959: Shewana3_2959 - hypothetical protein (RefSeq), at 3,552,383 to 3,553,984 _2959 Shewana3_2960: Shewana3_2960 - restriction modification system DNA specificity subunit (RefSeq), at 3,554,005 to 3,555,768 _2960 Position (kb) 3552 3553 3554Strain fitness (log2 ratio) -2 -1 0 1 2at 3551.389 kb on - strand, within Shewana3_2957at 3551.482 kb on - strandat 3551.519 kb on - strandat 3551.519 kb on - strandat 3551.940 kb on - strand, within Shewana3_2958at 3552.141 kb on - strand, within Shewana3_2958at 3552.307 kb on + strandat 3552.315 kb on - strandat 3552.353 kb on + strandat 3552.486 kb on - strandat 3552.666 kb on + strand, within Shewana3_2959at 3552.775 kb on + strand, within Shewana3_2959at 3552.780 kb on + strand, within Shewana3_2959at 3552.878 kb on - strand, within Shewana3_2959at 3553.074 kb on + strand, within Shewana3_2959at 3553.129 kb on - strand, within Shewana3_2959at 3553.311 kb on - strand, within Shewana3_2959at 3553.372 kb on - strand, within Shewana3_2959at 3553.419 kb on + strand, within Shewana3_2959at 3553.427 kb on - strand, within Shewana3_2959at 3553.718 kb on + strand, within Shewana3_2959at 3553.787 kb on + strand, within Shewana3_2959at 3553.899 kb on + strandat 3553.899 kb on + strandat 3554.002 kb on + strandat 3554.010 kb on - strandat 3554.028 kb on - strandat 3554.202 kb on + strand, within Shewana3_2960at 3554.342 kb on - strand, within Shewana3_2960at 3554.366 kb on + strand, within Shewana3_2960at 3554.413 kb on + strand, within Shewana3_2960at 3554.416 kb on - strand, within Shewana3_2960at 3554.427 kb on + strand, within Shewana3_2960at 3554.496 kb on + strand, within Shewana3_2960at 3554.596 kb on + strand, within Shewana3_2960at 3554.604 kb on - strand, within Shewana3_2960at 3554.702 kb on - strand, within Shewana3_2960at 3554.729 kb on + strand, within Shewana3_2960at 3554.737 kb on - strand, within Shewana3_2960at 3554.748 kb on + strand, within Shewana3_2960at 3554.756 kb on - strand, within Shewana3_2960at 3554.805 kb on - strand, within Shewana3_2960at 3554.805 kb on - strand, within Shewana3_2960at 3554.885 kb on - strand, within Shewana3_2960at 3554.976 kb on + strand, within Shewana3_2960at 3554.983 kb on - strand, within Shewana3_2960at 3554.984 kb on - strand, within Shewana3_2960

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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3,551,389 - Shewana3_2957 0.81 +2.3
3,551,482 - -0.2
3,551,519 - -0.6
3,551,519 - -0.9
3,551,940 - Shewana3_2958 0.45 -0.5
3,552,141 - Shewana3_2958 0.70 +0.0
3,552,307 + -1.7
3,552,315 - -0.5
3,552,353 + -0.2
3,552,486 - -0.6
3,552,666 + Shewana3_2959 0.18 +0.8
3,552,775 + Shewana3_2959 0.24 +1.1
3,552,780 + Shewana3_2959 0.25 -0.9
3,552,878 - Shewana3_2959 0.31 -0.2
3,553,074 + Shewana3_2959 0.43 -1.2
3,553,129 - Shewana3_2959 0.47 -2.0
3,553,311 - Shewana3_2959 0.58 +1.7
3,553,372 - Shewana3_2959 0.62 +2.0
3,553,419 + Shewana3_2959 0.65 +2.3
3,553,427 - Shewana3_2959 0.65 -1.3
3,553,718 + Shewana3_2959 0.83 +0.1
3,553,787 + Shewana3_2959 0.88 +1.7
3,553,899 + -1.2
3,553,899 + -0.4
3,554,002 + +1.7
3,554,010 - -2.1
3,554,028 - -2.6
3,554,202 + Shewana3_2960 0.11 -1.9
3,554,342 - Shewana3_2960 0.19 -1.5
3,554,366 + Shewana3_2960 0.20 +0.3
3,554,413 + Shewana3_2960 0.23 +1.2
3,554,416 - Shewana3_2960 0.23 -0.4
3,554,427 + Shewana3_2960 0.24 -1.7
3,554,496 + Shewana3_2960 0.28 -1.1
3,554,596 + Shewana3_2960 0.34 -1.8
3,554,604 - Shewana3_2960 0.34 +0.0
3,554,702 - Shewana3_2960 0.40 -0.9
3,554,729 + Shewana3_2960 0.41 +2.0
3,554,737 - Shewana3_2960 0.41 -0.3
3,554,748 + Shewana3_2960 0.42 -0.7
3,554,756 - Shewana3_2960 0.43 -1.1
3,554,805 - Shewana3_2960 0.45 +0.6
3,554,805 - Shewana3_2960 0.45 -0.0
3,554,885 - Shewana3_2960 0.50 -0.2
3,554,976 + Shewana3_2960 0.55 +0.7
3,554,983 - Shewana3_2960 0.55 -0.8
3,554,984 - Shewana3_2960 0.55 -0.6

Or see this region's nucleotide sequence