Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2958
Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.05 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,550,589 | + | Shewana3_2956 | 0.80 | +1.7 | |
3,550,590 | + | Shewana3_2956 | 0.80 | -0.6 | |
3,550,672 | + | Shewana3_2956 | 0.90 | +1.0 | |
3,550,713 | - | +0.7 | |||
3,551,018 | + | Shewana3_2957 | 0.33 | +3.3 | |
3,551,389 | - | Shewana3_2957 | 0.81 | +2.3 | |
3,551,482 | - | -0.2 | |||
3,551,519 | - | -0.6 | |||
3,551,519 | - | -0.9 | |||
3,551,940 | - | Shewana3_2958 | 0.45 | -0.5 | |
3,552,141 | - | Shewana3_2958 | 0.70 | +0.0 | |
3,552,307 | + | -1.7 | |||
3,552,315 | - | -0.5 | |||
3,552,353 | + | -0.2 | |||
3,552,486 | - | -0.6 | |||
3,552,666 | + | Shewana3_2959 | 0.18 | +0.8 | |
3,552,775 | + | Shewana3_2959 | 0.24 | +1.1 | |
3,552,780 | + | Shewana3_2959 | 0.25 | -0.9 | |
3,552,878 | - | Shewana3_2959 | 0.31 | -0.2 | |
3,553,074 | + | Shewana3_2959 | 0.43 | -1.2 | |
3,553,129 | - | Shewana3_2959 | 0.47 | -2.0 | |
3,553,311 | - | Shewana3_2959 | 0.58 | +1.7 | |
3,553,372 | - | Shewana3_2959 | 0.62 | +2.0 |
Or see this region's nucleotide sequence