Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2909 and Shewana3_2910 are separated by 864 nucleotides Shewana3_2910 and Shewana3_2911 overlap by 11 nucleotides
Shewana3_2909: Shewana3_2909 - hypothetical protein (RefSeq), at 3,482,337 to 3,483,914
_2909
Shewana3_2910: Shewana3_2910 - hypothetical protein (RefSeq), at 3,484,779 to 3,485,888
_2910
Shewana3_2911: Shewana3_2911 - no description, at 3,485,878 to 3,487,444
_2911
Position (kb)
3484
3485
3486 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3483.868 kb on - strand at 3483.875 kb on + strand at 3483.877 kb on - strand at 3483.888 kb on - strand at 3483.893 kb on - strand at 3483.893 kb on - strand at 3483.900 kb on + strand at 3483.923 kb on - strand at 3483.937 kb on + strand at 3483.937 kb on + strand at 3483.940 kb on - strand at 3483.945 kb on - strand at 3483.945 kb on - strand at 3484.006 kb on + strand at 3484.139 kb on - strand at 3484.142 kb on + strand at 3484.150 kb on - strand at 3484.191 kb on - strand at 3484.212 kb on + strand at 3484.227 kb on + strand at 3484.227 kb on + strand at 3484.227 kb on + strand at 3484.235 kb on - strand at 3484.235 kb on - strand at 3484.235 kb on - strand at 3484.235 kb on - strand at 3484.235 kb on - strand at 3484.279 kb on + strand at 3484.320 kb on + strand at 3484.343 kb on - strand at 3484.352 kb on + strand at 3484.370 kb on - strand at 3484.379 kb on + strand at 3484.397 kb on + strand at 3484.405 kb on - strand at 3484.414 kb on + strand at 3484.420 kb on - strand at 3484.426 kb on + strand at 3484.431 kb on - strand at 3484.434 kb on - strand at 3484.434 kb on - strand at 3484.439 kb on - strand at 3484.478 kb on + strand at 3484.608 kb on + strand at 3484.608 kb on + strand at 3484.614 kb on - strand at 3484.614 kb on - strand at 3484.614 kb on - strand at 3484.647 kb on + strand at 3484.650 kb on - strand at 3484.655 kb on - strand at 3484.660 kb on - strand at 3484.682 kb on - strand at 3484.697 kb on + strand at 3484.703 kb on + strand at 3484.711 kb on - strand at 3484.711 kb on - strand at 3484.867 kb on - strand at 3484.886 kb on - strand at 3485.291 kb on + strand, within Shewana3_2910 at 3485.409 kb on - strand, within Shewana3_2910 at 3485.454 kb on - strand, within Shewana3_2910 at 3485.653 kb on - strand, within Shewana3_2910 at 3485.734 kb on - strand, within Shewana3_2910 at 3485.752 kb on + strand, within Shewana3_2910 at 3485.986 kb on + strand at 3486.074 kb on + strand, within Shewana3_2911 at 3486.079 kb on + strand, within Shewana3_2911 at 3486.079 kb on + strand, within Shewana3_2911 at 3486.082 kb on - strand, within Shewana3_2911 at 3486.154 kb on + strand, within Shewana3_2911 at 3486.265 kb on - strand, within Shewana3_2911 at 3486.549 kb on + strand, within Shewana3_2911 at 3486.557 kb on - strand, within Shewana3_2911
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 3,483,868 - +1.0 3,483,875 + +0.2 3,483,877 - -0.3 3,483,888 - -1.3 3,483,893 - +1.2 3,483,893 - +0.4 3,483,900 + +0.7 3,483,923 - -1.9 3,483,937 + +1.2 3,483,937 + -1.7 3,483,940 - +3.4 3,483,945 - -0.2 3,483,945 - -0.5 3,484,006 + +0.4 3,484,139 - -0.3 3,484,142 + +2.4 3,484,150 - -0.1 3,484,191 - -0.9 3,484,212 + +0.0 3,484,227 + -0.1 3,484,227 + +0.7 3,484,227 + +0.8 3,484,235 - -1.4 3,484,235 - +1.4 3,484,235 - -0.8 3,484,235 - +0.0 3,484,235 - -1.7 3,484,279 + -0.3 3,484,320 + +0.4 3,484,343 - +2.1 3,484,352 + +0.4 3,484,370 - +0.1 3,484,379 + +3.4 3,484,397 + +0.5 3,484,405 - +0.7 3,484,414 + +1.4 3,484,420 - +1.1 3,484,426 + -1.0 3,484,431 - +0.0 3,484,434 - -1.5 3,484,434 - +0.9 3,484,439 - -0.5 3,484,478 + -1.2 3,484,608 + +0.8 3,484,608 + +1.4 3,484,614 - +0.2 3,484,614 - +1.2 3,484,614 - -1.2 3,484,647 + +1.4 3,484,650 - +0.0 3,484,655 - +1.8 3,484,660 - +1.1 3,484,682 - +1.4 3,484,697 + +1.4 3,484,703 + +1.4 3,484,711 - +0.4 3,484,711 - +1.4 3,484,867 - +1.8 3,484,886 - +0.8 3,485,291 + Shewana3_2910 0.46 -1.4 3,485,409 - Shewana3_2910 0.57 -1.0 3,485,454 - Shewana3_2910 0.61 -0.1 3,485,653 - Shewana3_2910 0.79 +0.5 3,485,734 - Shewana3_2910 0.86 +0.0 3,485,752 + Shewana3_2910 0.88 -2.2 3,485,986 + +0.2 3,486,074 + Shewana3_2911 0.13 -1.3 3,486,079 + Shewana3_2911 0.13 +0.9 3,486,079 + Shewana3_2911 0.13 -1.2 3,486,082 - Shewana3_2911 0.13 +0.0 3,486,154 + Shewana3_2911 0.18 -1.6 3,486,265 - Shewana3_2911 0.25 -0.6 3,486,549 + Shewana3_2911 0.43 +0.6 3,486,557 - Shewana3_2911 0.43 +0.8
Or see this region's nucleotide sequence