Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2910

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2909 and Shewana3_2910 are separated by 864 nucleotidesShewana3_2910 and Shewana3_2911 overlap by 11 nucleotides Shewana3_2909: Shewana3_2909 - hypothetical protein (RefSeq), at 3,482,337 to 3,483,914 _2909 Shewana3_2910: Shewana3_2910 - hypothetical protein (RefSeq), at 3,484,779 to 3,485,888 _2910 Shewana3_2911: Shewana3_2911 - no description, at 3,485,878 to 3,487,444 _2911 Position (kb) 3484 3485 3486Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3483.868 kb on - strandat 3483.875 kb on + strandat 3483.877 kb on - strandat 3483.888 kb on - strandat 3483.893 kb on - strandat 3483.893 kb on - strandat 3483.900 kb on + strandat 3483.923 kb on - strandat 3483.937 kb on + strandat 3483.937 kb on + strandat 3483.940 kb on - strandat 3483.945 kb on - strandat 3483.945 kb on - strandat 3484.006 kb on + strandat 3484.139 kb on - strandat 3484.142 kb on + strandat 3484.150 kb on - strandat 3484.191 kb on - strandat 3484.212 kb on + strandat 3484.227 kb on + strandat 3484.227 kb on + strandat 3484.227 kb on + strandat 3484.235 kb on - strandat 3484.235 kb on - strandat 3484.235 kb on - strandat 3484.235 kb on - strandat 3484.235 kb on - strandat 3484.279 kb on + strandat 3484.320 kb on + strandat 3484.343 kb on - strandat 3484.352 kb on + strandat 3484.370 kb on - strandat 3484.379 kb on + strandat 3484.397 kb on + strandat 3484.405 kb on - strandat 3484.414 kb on + strandat 3484.420 kb on - strandat 3484.426 kb on + strandat 3484.431 kb on - strandat 3484.434 kb on - strandat 3484.434 kb on - strandat 3484.439 kb on - strandat 3484.478 kb on + strandat 3484.608 kb on + strandat 3484.608 kb on + strandat 3484.614 kb on - strandat 3484.614 kb on - strandat 3484.614 kb on - strandat 3484.647 kb on + strandat 3484.650 kb on - strandat 3484.655 kb on - strandat 3484.660 kb on - strandat 3484.682 kb on - strandat 3484.697 kb on + strandat 3484.703 kb on + strandat 3484.711 kb on - strandat 3484.711 kb on - strandat 3484.867 kb on - strandat 3484.886 kb on - strandat 3485.291 kb on + strand, within Shewana3_2910at 3485.409 kb on - strand, within Shewana3_2910at 3485.454 kb on - strand, within Shewana3_2910at 3485.653 kb on - strand, within Shewana3_2910at 3485.734 kb on - strand, within Shewana3_2910at 3485.752 kb on + strand, within Shewana3_2910at 3485.986 kb on + strandat 3486.074 kb on + strand, within Shewana3_2911at 3486.079 kb on + strand, within Shewana3_2911at 3486.079 kb on + strand, within Shewana3_2911at 3486.082 kb on - strand, within Shewana3_2911at 3486.154 kb on + strand, within Shewana3_2911at 3486.265 kb on - strand, within Shewana3_2911at 3486.549 kb on + strand, within Shewana3_2911at 3486.557 kb on - strand, within Shewana3_2911

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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3,483,868 - +1.0
3,483,875 + +0.2
3,483,877 - -0.3
3,483,888 - -1.3
3,483,893 - +1.2
3,483,893 - +0.4
3,483,900 + +0.7
3,483,923 - -1.9
3,483,937 + +1.2
3,483,937 + -1.7
3,483,940 - +3.4
3,483,945 - -0.2
3,483,945 - -0.5
3,484,006 + +0.4
3,484,139 - -0.3
3,484,142 + +2.4
3,484,150 - -0.1
3,484,191 - -0.9
3,484,212 + +0.0
3,484,227 + -0.1
3,484,227 + +0.7
3,484,227 + +0.8
3,484,235 - -1.4
3,484,235 - +1.4
3,484,235 - -0.8
3,484,235 - +0.0
3,484,235 - -1.7
3,484,279 + -0.3
3,484,320 + +0.4
3,484,343 - +2.1
3,484,352 + +0.4
3,484,370 - +0.1
3,484,379 + +3.4
3,484,397 + +0.5
3,484,405 - +0.7
3,484,414 + +1.4
3,484,420 - +1.1
3,484,426 + -1.0
3,484,431 - +0.0
3,484,434 - -1.5
3,484,434 - +0.9
3,484,439 - -0.5
3,484,478 + -1.2
3,484,608 + +0.8
3,484,608 + +1.4
3,484,614 - +0.2
3,484,614 - +1.2
3,484,614 - -1.2
3,484,647 + +1.4
3,484,650 - +0.0
3,484,655 - +1.8
3,484,660 - +1.1
3,484,682 - +1.4
3,484,697 + +1.4
3,484,703 + +1.4
3,484,711 - +0.4
3,484,711 - +1.4
3,484,867 - +1.8
3,484,886 - +0.8
3,485,291 + Shewana3_2910 0.46 -1.4
3,485,409 - Shewana3_2910 0.57 -1.0
3,485,454 - Shewana3_2910 0.61 -0.1
3,485,653 - Shewana3_2910 0.79 +0.5
3,485,734 - Shewana3_2910 0.86 +0.0
3,485,752 + Shewana3_2910 0.88 -2.2
3,485,986 + +0.2
3,486,074 + Shewana3_2911 0.13 -1.3
3,486,079 + Shewana3_2911 0.13 +0.9
3,486,079 + Shewana3_2911 0.13 -1.2
3,486,082 - Shewana3_2911 0.13 +0.0
3,486,154 + Shewana3_2911 0.18 -1.6
3,486,265 - Shewana3_2911 0.25 -0.6
3,486,549 + Shewana3_2911 0.43 +0.6
3,486,557 - Shewana3_2911 0.43 +0.8

Or see this region's nucleotide sequence