Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2900

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2898 and Shewana3_2899 are separated by 314 nucleotidesShewana3_2899 and Shewana3_2900 are separated by 2 nucleotidesShewana3_2900 and Shewana3_2901 are separated by 21 nucleotides Shewana3_2898: Shewana3_2898 - flagellar motor protein PomA (RefSeq), at 3,467,743 to 3,468,510 _2898 Shewana3_2899: Shewana3_2899 - exodeoxyribonuclease VII small subunit (RefSeq), at 3,468,825 to 3,469,064 _2899 Shewana3_2900: Shewana3_2900 - farnesyl-diphosphate synthase (RefSeq), at 3,469,067 to 3,469,948 _2900 Shewana3_2901: Shewana3_2901 - 1-deoxy-D-xylulose-5-phosphate synthase (RefSeq), at 3,469,970 to 3,471,838 _2901 Position (kb) 3469 3470Strain fitness (log2 ratio) -1 0 1 2at 3468.156 kb on - strand, within Shewana3_2898at 3468.286 kb on + strand, within Shewana3_2898at 3468.455 kb on + strandat 3468.463 kb on - strandat 3468.783 kb on + strandat 3468.786 kb on + strandat 3469.055 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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3,468,156 - Shewana3_2898 0.54 +1.5
3,468,286 + Shewana3_2898 0.71 -0.8
3,468,455 + +1.8
3,468,463 - +0.8
3,468,783 + +0.7
3,468,786 + -0.3
3,469,055 + -1.6

Or see this region's nucleotide sequence