Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2863 and Shewana3_2864 are separated by 62 nucleotides Shewana3_2864 and Shewana3_2865 are separated by 155 nucleotides Shewana3_2865 and Shewana3_2866 are separated by 61 nucleotides Shewana3_2866 and Shewana3_2867 are separated by 140 nucleotides
Shewana3_2863: Shewana3_2863 - hypothetical protein (RefSeq), at 3,423,499 to 3,424,206
_2863
Shewana3_2864: Shewana3_2864 - TetR family transcriptional regulator (RefSeq), at 3,424,269 to 3,424,880
_2864
Shewana3_2865: Shewana3_2865 - glutathione S-transferase domain-containing protein (RefSeq), at 3,425,036 to 3,425,662
_2865
Shewana3_2866: Shewana3_2866 - glutathione S-transferase domain-containing protein (RefSeq), at 3,425,724 to 3,426,392
_2866
Shewana3_2867: Shewana3_2867 - Fmu (Sun) domain-containing protein (RefSeq), at 3,426,533 to 3,427,942
_2867
Position (kb)
3425
3426 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3424.144 kb on - strand at 3424.379 kb on - strand, within Shewana3_2864 at 3424.443 kb on - strand, within Shewana3_2864 at 3424.526 kb on - strand, within Shewana3_2864 at 3424.573 kb on + strand, within Shewana3_2864 at 3424.592 kb on - strand, within Shewana3_2864 at 3424.810 kb on - strand, within Shewana3_2864 at 3425.067 kb on + strand at 3425.197 kb on + strand, within Shewana3_2865 at 3425.438 kb on + strand, within Shewana3_2865 at 3425.616 kb on - strand at 3425.916 kb on - strand, within Shewana3_2866 at 3425.926 kb on - strand, within Shewana3_2866 at 3425.974 kb on - strand, within Shewana3_2866 at 3426.236 kb on + strand, within Shewana3_2866 at 3426.286 kb on + strand, within Shewana3_2866 at 3426.346 kb on + strand at 3426.476 kb on + strand at 3426.484 kb on - strand at 3426.659 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 3,424,144 - -0.7 3,424,379 - Shewana3_2864 0.18 +1.0 3,424,443 - Shewana3_2864 0.28 -0.6 3,424,526 - Shewana3_2864 0.42 +0.8 3,424,573 + Shewana3_2864 0.50 +3.4 3,424,592 - Shewana3_2864 0.53 +0.1 3,424,810 - Shewana3_2864 0.88 -0.0 3,425,067 + -0.5 3,425,197 + Shewana3_2865 0.26 -1.7 3,425,438 + Shewana3_2865 0.64 -0.6 3,425,616 - -1.7 3,425,916 - Shewana3_2866 0.29 -0.1 3,425,926 - Shewana3_2866 0.30 -0.2 3,425,974 - Shewana3_2866 0.37 -1.6 3,426,236 + Shewana3_2866 0.77 +0.8 3,426,286 + Shewana3_2866 0.84 -0.7 3,426,346 + -1.1 3,426,476 + -2.0 3,426,484 - -1.3 3,426,659 - -1.3
Or see this region's nucleotide sequence