Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2865

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2863 and Shewana3_2864 are separated by 62 nucleotidesShewana3_2864 and Shewana3_2865 are separated by 155 nucleotidesShewana3_2865 and Shewana3_2866 are separated by 61 nucleotidesShewana3_2866 and Shewana3_2867 are separated by 140 nucleotides Shewana3_2863: Shewana3_2863 - hypothetical protein (RefSeq), at 3,423,499 to 3,424,206 _2863 Shewana3_2864: Shewana3_2864 - TetR family transcriptional regulator (RefSeq), at 3,424,269 to 3,424,880 _2864 Shewana3_2865: Shewana3_2865 - glutathione S-transferase domain-containing protein (RefSeq), at 3,425,036 to 3,425,662 _2865 Shewana3_2866: Shewana3_2866 - glutathione S-transferase domain-containing protein (RefSeq), at 3,425,724 to 3,426,392 _2866 Shewana3_2867: Shewana3_2867 - Fmu (Sun) domain-containing protein (RefSeq), at 3,426,533 to 3,427,942 _2867 Position (kb) 3425 3426Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3424.144 kb on - strandat 3424.379 kb on - strand, within Shewana3_2864at 3424.443 kb on - strand, within Shewana3_2864at 3424.526 kb on - strand, within Shewana3_2864at 3424.573 kb on + strand, within Shewana3_2864at 3424.592 kb on - strand, within Shewana3_2864at 3424.810 kb on - strand, within Shewana3_2864at 3425.067 kb on + strandat 3425.197 kb on + strand, within Shewana3_2865at 3425.438 kb on + strand, within Shewana3_2865at 3425.616 kb on - strandat 3425.916 kb on - strand, within Shewana3_2866at 3425.926 kb on - strand, within Shewana3_2866at 3425.974 kb on - strand, within Shewana3_2866at 3426.236 kb on + strand, within Shewana3_2866at 3426.286 kb on + strand, within Shewana3_2866at 3426.346 kb on + strandat 3426.476 kb on + strandat 3426.484 kb on - strandat 3426.659 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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3,424,144 - -0.7
3,424,379 - Shewana3_2864 0.18 +1.0
3,424,443 - Shewana3_2864 0.28 -0.6
3,424,526 - Shewana3_2864 0.42 +0.8
3,424,573 + Shewana3_2864 0.50 +3.4
3,424,592 - Shewana3_2864 0.53 +0.1
3,424,810 - Shewana3_2864 0.88 -0.0
3,425,067 + -0.5
3,425,197 + Shewana3_2865 0.26 -1.7
3,425,438 + Shewana3_2865 0.64 -0.6
3,425,616 - -1.7
3,425,916 - Shewana3_2866 0.29 -0.1
3,425,926 - Shewana3_2866 0.30 -0.2
3,425,974 - Shewana3_2866 0.37 -1.6
3,426,236 + Shewana3_2866 0.77 +0.8
3,426,286 + Shewana3_2866 0.84 -0.7
3,426,346 + -1.1
3,426,476 + -2.0
3,426,484 - -1.3
3,426,659 - -1.3

Or see this region's nucleotide sequence