Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2854
Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.05 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,414,287 | + | Shewana3_2853 | 0.28 | +1.4 | |
3,414,358 | - | Shewana3_2853 | 0.37 | -0.4 | |
3,414,372 | - | Shewana3_2853 | 0.38 | +0.1 | |
3,414,451 | - | Shewana3_2853 | 0.48 | -0.5 | |
3,414,660 | - | Shewana3_2853 | 0.74 | -1.4 | |
3,414,737 | + | Shewana3_2853 | 0.83 | +0.8 | |
3,414,826 | + | +2.4 | |||
3,414,845 | - | -0.7 | |||
3,414,937 | - | +0.2 | |||
3,414,962 | + | +1.1 | |||
3,415,157 | + | Shewana3_2854 | 0.12 | +0.5 | |
3,415,324 | - | Shewana3_2854 | 0.81 | +0.6 | |
3,415,324 | - | Shewana3_2854 | 0.81 | -0.6 | |
3,415,479 | + | Shewana3_2855 | 0.23 | -1.3 | |
3,415,849 | - | -2.4 | |||
3,415,859 | - | +0.7 | |||
3,415,875 | + | -1.7 | |||
3,416,146 | - | Shewana3_2856 | 0.24 | +1.4 | |
3,416,149 | - | Shewana3_2856 | 0.25 | +3.4 | |
3,416,284 | - | Shewana3_2856 | 0.47 | -1.2 |
Or see this region's nucleotide sequence