Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2850 and Shewana3_2851 are separated by 271 nucleotides Shewana3_2851 and Shewana3_2852 are separated by 164 nucleotides Shewana3_2852 and Shewana3_2853 are separated by 124 nucleotides
Shewana3_2850: Shewana3_2850 - hypothetical protein (RefSeq), at 3,412,066 to 3,412,542
_2850
Shewana3_2851: Shewana3_2851 - transport-associated (RefSeq), at 3,412,814 to 3,413,362
_2851
Shewana3_2852: Shewana3_2852 - hypothetical protein (RefSeq), at 3,413,527 to 3,413,937
_2852
Shewana3_2853: Shewana3_2853 - hypothetical protein (RefSeq), at 3,414,062 to 3,414,871
_2853
Position (kb)
3412
3413
3414 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3411.824 kb on - strand at 3411.851 kb on - strand at 3412.049 kb on - strand at 3412.395 kb on - strand, within Shewana3_2850 at 3412.423 kb on - strand, within Shewana3_2850 at 3412.459 kb on + strand, within Shewana3_2850 at 3412.514 kb on + strand at 3412.514 kb on + strand at 3412.514 kb on + strand at 3412.830 kb on + strand at 3412.888 kb on + strand, within Shewana3_2851 at 3412.888 kb on + strand, within Shewana3_2851 at 3412.960 kb on + strand, within Shewana3_2851 at 3412.961 kb on - strand, within Shewana3_2851 at 3413.049 kb on + strand, within Shewana3_2851 at 3413.249 kb on + strand, within Shewana3_2851 at 3413.299 kb on - strand, within Shewana3_2851 at 3413.373 kb on - strand at 3413.650 kb on - strand, within Shewana3_2852 at 3413.657 kb on - strand, within Shewana3_2852 at 3413.659 kb on + strand, within Shewana3_2852 at 3413.694 kb on + strand, within Shewana3_2852 at 3413.863 kb on + strand, within Shewana3_2852 at 3413.983 kb on - strand at 3414.053 kb on + strand at 3414.287 kb on + strand, within Shewana3_2853 at 3414.358 kb on - strand, within Shewana3_2853
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 3,411,824 - -0.7 3,411,851 - -0.5 3,412,049 - +0.6 3,412,395 - Shewana3_2850 0.69 -0.6 3,412,423 - Shewana3_2850 0.75 +0.4 3,412,459 + Shewana3_2850 0.82 -0.2 3,412,514 + -2.1 3,412,514 + -0.9 3,412,514 + +0.2 3,412,830 + -1.7 3,412,888 + Shewana3_2851 0.13 -1.2 3,412,888 + Shewana3_2851 0.13 -0.4 3,412,960 + Shewana3_2851 0.27 +0.0 3,412,961 - Shewana3_2851 0.27 -0.9 3,413,049 + Shewana3_2851 0.43 -0.5 3,413,249 + Shewana3_2851 0.79 -1.9 3,413,299 - Shewana3_2851 0.88 -1.2 3,413,373 - +0.0 3,413,650 - Shewana3_2852 0.30 -0.3 3,413,657 - Shewana3_2852 0.32 +2.2 3,413,659 + Shewana3_2852 0.32 -1.7 3,413,694 + Shewana3_2852 0.41 -1.2 3,413,863 + Shewana3_2852 0.82 -0.1 3,413,983 - +0.2 3,414,053 + +1.8 3,414,287 + Shewana3_2853 0.28 +1.4 3,414,358 - Shewana3_2853 0.37 -0.4
Or see this region's nucleotide sequence