Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2800

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2799 and dnaE are separated by 77 nucleotidesdnaE and rnhB are separated by 117 nucleotidesrnhB and lpxB overlap by 1 nucleotides Shewana3_2799: Shewana3_2799 - tRNA(Ile)-lysidine synthetase (RefSeq), at 3,342,683 to 3,344,080 _2799 Shewana3_2800: dnaE - DNA polymerase III subunit alpha (RefSeq), at 3,344,158 to 3,347,634 dnaE Shewana3_2801: rnhB - ribonuclease HII (RefSeq), at 3,347,752 to 3,348,381 rnhB Shewana3_2802: lpxB - lipid-A-disaccharide synthase (RefSeq), at 3,348,381 to 3,349,538 lpxB Position (kb) 3344 3345 3346 3347 3348Strain fitness (log2 ratio) -1 0 1at 3347.757 kb on - strandat 3347.757 kb on - strandat 3347.843 kb on + strand, within rnhBat 3347.852 kb on + strand, within rnhBat 3347.860 kb on - strand, within rnhBat 3347.860 kb on - strand, within rnhBat 3348.269 kb on + strand, within rnhBat 3348.330 kb on - strandat 3348.426 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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3,347,757 - +0.8
3,347,757 - +0.5
3,347,843 + rnhB Shewana3_2801 0.14 +0.5
3,347,852 + rnhB Shewana3_2801 0.16 +0.8
3,347,860 - rnhB Shewana3_2801 0.17 +0.9
3,347,860 - rnhB Shewana3_2801 0.17 -0.1
3,348,269 + rnhB Shewana3_2801 0.82 +0.7
3,348,330 - -0.0
3,348,426 - -0.1

Or see this region's nucleotide sequence