Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2794
Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.05 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,332,278 | + | Shewana3_2793 | 0.13 | +1.7 | |
3,332,431 | + | Shewana3_2793 | 0.27 | +0.9 | |
3,332,639 | - | Shewana3_2793 | 0.46 | -0.3 | |
3,332,644 | - | Shewana3_2793 | 0.46 | +1.9 | |
3,332,653 | + | Shewana3_2793 | 0.47 | -1.4 | |
3,332,688 | + | Shewana3_2793 | 0.50 | +1.5 | |
3,332,732 | - | Shewana3_2793 | 0.54 | -2.0 | |
3,332,809 | + | Shewana3_2793 | 0.61 | -0.9 | |
3,332,935 | + | Shewana3_2793 | 0.73 | +0.8 | |
3,332,966 | - | Shewana3_2793 | 0.76 | -0.4 | |
3,333,079 | + | Shewana3_2793 | 0.86 | +1.9 | |
3,333,093 | - | Shewana3_2793 | 0.87 | -0.2 | |
3,333,137 | + | +1.5 | |||
3,333,156 | + | +1.5 | |||
3,333,185 | + | -2.4 | |||
3,333,321 | - | -1.2 | |||
3,333,337 | + | +1.9 | |||
3,333,469 | - | Shewana3_2794 | 0.26 | +1.1 | |
3,334,009 | - | +1.4 | |||
3,334,023 | - | -1.1 | |||
3,334,043 | - | +1.1 | |||
3,334,043 | - | +0.5 | |||
3,334,068 | - | -0.8 | |||
3,334,389 | - | +1.2 | |||
3,334,389 | - | -0.5 | |||
3,334,795 | + | Shewana3_2795 | 0.21 | -1.3 | |
3,334,887 | + | Shewana3_2795 | 0.24 | +2.5 |
Or see this region's nucleotide sequence