Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2792
Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.05 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,331,004 | - | +0.3 | |||
3,331,064 | - | -0.2 | |||
3,331,165 | + | Shewana3_2791 | 0.22 | -1.5 | |
3,331,173 | - | Shewana3_2791 | 0.23 | -2.2 | |
3,331,916 | - | Shewana3_2792 | 0.46 | -1.9 | |
3,332,130 | + | +1.7 | |||
3,332,180 | - | -0.7 | |||
3,332,211 | - | +0.7 | |||
3,332,245 | - | -1.2 | |||
3,332,278 | + | Shewana3_2793 | 0.13 | +1.7 | |
3,332,431 | + | Shewana3_2793 | 0.27 | +0.9 | |
3,332,639 | - | Shewana3_2793 | 0.46 | -0.3 | |
3,332,644 | - | Shewana3_2793 | 0.46 | +1.9 | |
3,332,653 | + | Shewana3_2793 | 0.47 | -1.4 | |
3,332,688 | + | Shewana3_2793 | 0.50 | +1.5 | |
3,332,732 | - | Shewana3_2793 | 0.54 | -2.0 | |
3,332,809 | + | Shewana3_2793 | 0.61 | -0.9 | |
3,332,935 | + | Shewana3_2793 | 0.73 | +0.8 | |
3,332,966 | - | Shewana3_2793 | 0.76 | -0.4 |
Or see this region's nucleotide sequence